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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9928-RA through 18771 annotations produced 1 hits



(CG9928):

Annotation Number : CG9928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032472
Gbrowse : chr2L:13142480-13142902 (-) // 100.0 //
Probeset : 1632087_at
Accessions : protein= NP_609602;, nucleotide= NM_135758;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032472.
BDGP gene expression has embryonic in situ data for CG9928: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032472 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 ± 34 of 4 0.10Down
Head3003 ± 904 of 4 4.00Up
Eye2188 ± 2004 of 4 2.94Up
Thoracicoabdominal ganglion104 ± 124 of 4 0.10Down
Salivary gland18 ± 40 of 4 0.03Down
Crop55 ± 84 of 4 0.10Down
Midgut4 ± 11 of 4 0.00Down
Tubule68 ± 163 of 4 0.10Down
Hindgut210 ± 64 of 4 0.30Down
Heart2472 ± 1584 of 4 3.33Up
Fat body3996 ± 3624 of 4 5.38Up
Ovary5 ± 01 of 4 0.00Down
Testis9 ± 14 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca3593 ± 854 of 4 4.83Up
Mated spermatheca3208 ± 3524 of 4 4.32Up
Adult carcass2815 ± 1434 of 4 3.80Up
Larval CNS1 ± 10 of 4 0.00Down
Larval Salivary gland3 ± 10 of 4 0.01Down
Larval midgut4 ± 11 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut7 ± 13 of 4 0.01Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea36 ± 334 of 4 0.05Down
Larval carcass7 ± 31 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly743 ± 614 of 4

Looking for CG9928-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime