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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9933-RA through 18771 annotations produced 1 hits



A16 (A16):

Annotation Number : CG9933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028965
Gbrowse : chr2L:13019569-13021307 (-) // 100.0 //
Probeset : 1638919_at
Accessions : protein= NP_609598;, nucleotide= NM_135754;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : 0003682 // chromatin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0028965.
VDRC has 2 RNAi stocks for FBgn0028965 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 24 of 4 1.00None
Head80 24 of 4 0.60Down
Eye108 54 of 4 0.79Down
Thoracicoabdominal ganglion111 34 of 4 0.80Down
Salivary gland84 64 of 4 0.61Down
Crop240 84 of 4 1.70Up
Midgut73 44 of 4 0.50Down
Tubule94 14 of 4 0.70Down
Hindgut74 34 of 4 0.50Down
Heart150 84 of 4 1.10None
Fat body112 34 of 4 0.82Down
Ovary228 54 of 4 1.70Up
Testis295 154 of 4 2.20Up
Male accessory glands179 34 of 4 1.30Up
Virgin spermatheca104 04 of 4 0.76Down
Mated spermatheca112 14 of 4 0.82Down
Adult carcass112 64 of 4 0.80Down
Larval CNS180 104 of 4 1.31Up
Larval Salivary gland178 84 of 4 1.30Up
Larval midgut82 44 of 4 0.60Down
Larval tubule124 34 of 4 0.90None
Larval hindgut93 44 of 4 0.68Down
Larval fat body171 84 of 4 1.20Up
Larval trachea167 74 of 4 1.22Up
Larval carcass111 64 of 4 0.81Down
S2 cells (growing)117 14 of 4 0.86None
Whole fly137 74 of 4

Looking for CG9933-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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