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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9935-RA through 18771 annotations produced 1 hits



(CG9935):

Annotation Number : CG9935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039916
Gbrowse : chr4:656750-667182 (-) // 100.0 //
Probeset : 1626574_at
Accessions : protein= NP_001036250; /// NP_001036251; /// NP_651931;, nucleotide= NM_001042785; /// NM_001042786; /// NM_143674;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0039916.
BDGP gene expression has embryonic in situ data for CG9935: 4 pix of staining in 1 body parts.
Homophila reports that CG9935 is a close match (5e-97) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 2 RNAi stocks for FBgn0039916 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 24 of 4 2.50Up
Head218 94 of 412.20Up
Eye825 594 of 445.98Up
Thoracicoabdominal ganglion10 23 of 4 0.60None
Salivary gland14 31 of 4 0.79None
Crop6 20 of 4 0.30Down
Midgut6 00 of 4 0.40Down
Tubule4 00 of 4 0.20Down
Hindgut15 24 of 4 0.90None
Heart3 10 of 4 0.18Down
Fat body8 32 of 4 0.46Down
Ovary1 00 of 4 0.10Down
Testis5 12 of 4 0.30Down
Male accessory glands39 64 of 4 2.20Up
Virgin spermatheca8 13 of 4 0.49Down
Mated spermatheca11 32 of 4 0.66None
Adult carcass5 10 of 4 0.30Down
Larval CNS8 14 of 4 0.50Down
Larval Salivary gland8 10 of 4 0.49Down
Larval midgut2 10 of 4 0.12Down
Larval tubule6 22 of 4 0.40Down
Larval hindgut6 02 of 4 0.37Down
Larval fat body14 03 of 4 0.80None
Larval trachea15 231 of 4 0.85None
Larval carcass5 01 of 4 0.32Down
S2 cells (growing)6 01 of 4 0.37Down
Whole fly18 24 of 4

Looking for CG9935-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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