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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9947-RA through 18771 annotations produced 1 hits



(CG9947):

Annotation Number : CG9947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030752
Gbrowse : chrX:16333179-16335313 (-) // 100.0 //
Probeset : 1627863_at
Accessions : protein= NP_573128;, nucleotide= NM_132900;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0030752.
BDGP gene expression has embryonic in situ data for CG9947: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030752 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 ± 164 of 4 1.60Up
Head197 ± 184 of 4 1.30None
Eye291 ± 124 of 4 1.98Up
Thoracicoabdominal ganglion251 ± 24 of 4 1.70Up
Salivary gland292 ± 134 of 4 1.98Up
Crop212 ± 24 of 4 1.40Up
Midgut675 ± 134 of 4 4.60Up
Tubule220 ± 104 of 4 1.50Up
Hindgut257 ± 104 of 4 1.70Up
Heart178 ± 104 of 4 1.21None
Fat body119 ± 114 of 4 0.81None
Ovary169 ± 14 of 4 1.10None
Testis51 ± 24 of 4 0.40Down
Male accessory glands274 ± 94 of 4 1.90Up
Virgin spermatheca158 ± 64 of 4 1.08None
Mated spermatheca229 ± 104 of 4 1.55Up
Adult carcass132 ± 84 of 4 0.90None
Larval CNS205 ± 284 of 4 1.39Up
Larval Salivary gland441 ± 124 of 4 2.99Up
Larval midgut700 ± 284 of 4 4.75Up
Larval tubule365 ± 24 of 4 2.50Up
Larval hindgut363 ± 124 of 4 2.46Up
Larval fat body240 ± 214 of 4 1.60Up
Larval trachea225 ± 154 of 4 1.52Up
Larval carcass182 ± 154 of 4 1.24None
S2 cells (growing)815 ± 134 of 4 5.53Up
Whole fly147 ± 114 of 4

Looking for CG9947-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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