Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9949-RA through 18771 annotations produced 1 hits



anon-fast-evolving-2H7 (sina):

Annotation Number : CG9949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003410
Gbrowse : chr3L:16845844-16852050 (+) // 100.0 //
Probeset : 1632100_s_at
Accessions : protein= NP_476725; /// NP_730206;, nucleotide= NM_057377; /// NM_168689;
Pathway : 0000151 // ubiquitin ligase complex // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0003410.
BDGP gene expression has embryonic in situ data for sina: 9 pix of staining in 3 body parts.
BioGrid reports that CG9949 interacts with CG9242 CG12676 CG1242 CG1242 CG12559 CG4385 CG8815 CG7524 CG7425 CG32045 CG32045 CG7672 CG7672 CG7672 CG7672 CG8817 CG8817 CG5099 CG5099 CG10108 CG10108 CG10108 CG10108 CG8705 CG8705 CG17228 CG1921 CG1921 CG1856 CG1856 CG32217 CG7425 CG10108 CG1856 .
TRiP has 1 RNAi stocks for FBgn0003410 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain305 ± 94 of 4 3.10Up
Head147 ± 124 of 4 1.50Up
Eye149 ± 104 of 4 1.50Up
Thoracicoabdominal ganglion360 ± 244 of 4 3.60Up
Salivary gland207 ± 244 of 4 2.08Up
Crop142 ± 74 of 4 1.40Up
Midgut97 ± 34 of 4 1.00None
Tubule124 ± 54 of 4 1.20Up
Hindgut126 ± 94 of 4 1.30None
Heart123 ± 64 of 4 1.24None
Fat body119 ± 154 of 4 1.20None
Ovary95 ± 64 of 4 1.00None
Testis26 ± 24 of 4 0.30Down
Male accessory glands122 ± 74 of 4 1.20None
Virgin spermatheca204 ± 124 of 4 2.05Up
Mated spermatheca269 ± 134 of 4 2.71Up
Adult carcass125 ± 114 of 4 1.30None
Larval CNS510 ± 894 of 4 5.12Up
Larval Salivary gland172 ± 154 of 4 1.74Up
Larval midgut127 ± 144 of 4 1.28None
Larval tubule339 ± 174 of 4 3.40Up
Larval hindgut139 ± 54 of 4 1.40Up
Larval fat body226 ± 134 of 4 2.30Up
Larval trachea202 ± 294 of 4 2.04Up
Larval carcass126 ± 74 of 4 1.27None
S2 cells (growing)217 ± 74 of 4 2.18Up
Whole fly99 ± 114 of 4

Looking for CG9949-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime