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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9954-RA through 18771 annotations produced 1 hits

maf-S (maf-S):

Annotation Number : CG9954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034534
Gbrowse : chr2R:16528475-16529179 (+) // 100.0 //
Probeset : 1635314_at
Accessions : protein= NP_611500;, nucleotide= NM_137656;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // no
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0034534.
Homophila reports that CG9954 is a close match (6e-11) to human gene D14S46E;NRL;RP27 (NP_006168), a gene associated with Retinal degeneration, autosomal recessive, clumped pigment type (3);Retinitis pigmentosa-27 (3).
TRiP has 2 RNAi stocks for FBgn0034534 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034534 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain936 154 of 4 1.80Up
Head998 464 of 4 2.00Up
Eye1516 324 of 4 2.99Up
Thoracicoabdominal ganglion928 294 of 4 1.80Up
Salivary gland1222 334 of 4 2.41Up
Crop1001 124 of 4 2.00Up
Midgut913 284 of 4 1.80Up
Tubule677 354 of 4 1.30Up
Hindgut982 224 of 4 1.90Up
Heart564 454 of 4 1.11None
Fat body500 274 of 4 0.99None
Ovary528 114 of 4 1.00None
Testis540 254 of 4 1.10None
Male accessory glands1884 394 of 4 3.70Up
Virgin spermatheca1001 384 of 4 1.98Up
Mated spermatheca1031 524 of 4 2.03Up
Adult carcass654 394 of 4 1.30Up
Larval CNS569 374 of 4 1.12Up
Larval Salivary gland564 124 of 4 1.11Up
Larval midgut614 524 of 4 1.21None
Larval tubule666 114 of 4 1.30Up
Larval hindgut432 134 of 4 0.85Down
Larval fat body719 434 of 4 1.40Up
Larval trachea571 924 of 4 1.13None
Larval carcass313 314 of 4 0.62Down
S2 cells (growing)484 154 of 4 0.96None
Whole fly507 94 of 4

Looking for CG9954-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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