FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9984-RA through 18771 annotations produced 1 hits

TH1 (TH1):

Annotation Number : CG9984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010416
Gbrowse : chrX:16282852-16285443 (-) // 100.0 //
Probeset : 1641532_at
Accessions : protein= NP_573123;, nucleotide= NM_132895;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005703 // polytene chromosome puff // inferred from direc
Interpro : 0003723 // RNA binding // inferred from direct assay /// 0003729 // mRNA binding // inferred from direct assay
FlyMine data for FBgn0010416.
BDGP gene expression has embryonic in situ data for TH1: 16 pix of staining in 19 body parts.
TRiP has 1 RNAi stocks for FBgn0010416 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010416 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	101 ± 2	4 of 4	0.80	None
Head	91 ± 10	4 of 4	0.70	Down
Eye	62 ± 2	4 of 4	0.46	Down
Thoracicoabdominal ganglion	103 ± 2	4 of 4	0.80	None
Salivary gland	183 ± 19	4 of 4	1.36	None
Crop	130 ± 9	4 of 4	1.00	None
Midgut	117 ± 3	4 of 4	0.90	None
Tubule	92 ± 2	4 of 4	0.70	Down
Hindgut	92 ± 1	4 of 4	0.70	Down
Heart	89 ± 10	4 of 4	0.66	Down
Fat body	135 ± 6	4 of 4	1.00	None
Ovary	264 ± 5	4 of 4	2.00	Up
Testis	57 ± 0	4 of 4	0.40	Down
Male accessory glands	227 ± 5	4 of 4	1.70	Up
Virgin spermatheca	193 ± 10	4 of 4	1.43	Up
Mated spermatheca	245 ± 9	4 of 4	1.81	Up
Adult carcass	70 ± 3	4 of 4	0.50	Down
Larval CNS	242 ± 26	4 of 4	1.79	Up
Larval Salivary gland	284 ± 6	4 of 4	2.10	Up
Larval midgut	110 ± 1	4 of 4	0.82	None
Larval tubule	152 ± 3	4 of 4	1.10	None
Larval hindgut	127 ± 7	4 of 4	0.94	None
Larval fat body	173 ± 15	4 of 4	1.30	None
Larval trachea	149 ± 26	4 of 4	1.11	None
Larval carcass	130 ± 6	4 of 4	0.96	None
S2 cells (growing)	228 ± 6	4 of 4	1.69	Up
Whole fly	135 ± 13	4 of 4

Looking for CG9984-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720