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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9987-RA through 18771 annotations produced 1 hits



(CG9987):

Annotation Number : CG9987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032781
Gbrowse : chr2L:19430656-19432444 (+) // 100.0 //
Probeset : 1639553_at
Accessions : protein= NP_609965;, nucleotide= NM_136121;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032781.
VDRC has 4 RNAi stocks for FBgn0032781 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 104 of 4 1.30Up
Head119 54 of 4 0.70Down
Eye82 14 of 4 0.47Down
Thoracicoabdominal ganglion327 44 of 4 1.90Up
Salivary gland125 64 of 4 0.71Down
Crop138 34 of 4 0.80Down
Midgut97 24 of 4 0.60Down
Tubule221 204 of 4 1.30Up
Hindgut114 34 of 4 0.60Down
Heart114 54 of 4 0.65Down
Fat body114 84 of 4 0.65Down
Ovary311 94 of 4 1.80Up
Testis112 34 of 4 0.60Down
Male accessory glands317 44 of 4 1.80Up
Virgin spermatheca191 44 of 4 1.09Up
Mated spermatheca217 94 of 4 1.23Up
Adult carcass119 44 of 4 0.70Down
Larval CNS337 104 of 4 1.91Up
Larval Salivary gland224 04 of 4 1.28Up
Larval midgut122 64 of 4 0.70Down
Larval tubule156 54 of 4 0.90Down
Larval hindgut159 54 of 4 0.90Down
Larval fat body119 44 of 4 0.70Down
Larval trachea213 314 of 4 1.21None
Larval carcass181 124 of 4 1.03None
S2 cells (growing)333 24 of 4 1.89Up
Whole fly176 44 of 4

Looking for CG9987-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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