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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9988-RA through 18771 annotations produced 1 hits



(CG9988):

Annotation Number : CG9988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039591
Gbrowse : chr3R:24462133-24464266 (+) // 100.0 //
Probeset : 1638584_at
Accessions : protein= NP_651625;, nucleotide= NM_143368;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0039591.
VDRC has 3 RNAi stocks for FBgn0039591 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head10 22 of 4 0.50Down
Eye1 00 of 4 0.07Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland8 10 of 4 0.40Down
Crop6 41 of 4 0.30Down
Midgut153 64 of 4 7.00Up
Tubule3 00 of 4 0.10Down
Hindgut5 00 of 4 0.30Down
Heart1 00 of 4 0.09Down
Fat body6 20 of 4 0.32Down
Ovary1 00 of 4 0.10Down
Testis6 10 of 4 0.30Down
Male accessory glands7 20 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.08Down
Mated spermatheca1 00 of 4 0.08Down
Adult carcass7 20 of 4 0.40Down
Larval CNS1 10 of 4 0.06Down
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut195 174 of 4 8.97Up
Larval tubule4 10 of 4 0.20Down
Larval hindgut1 00 of 4 0.09Down
Larval fat body3 10 of 4 0.20Down
Larval trachea1 10 of 4 0.08Down
Larval carcass4 00 of 4 0.20Down
S2 cells (growing)1 00 of 4 0.05Down
Whole fly21 24 of 4

Looking for CG9988-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime