FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9990-RA through 18771 annotations produced 1 hits

(CG9990):

Annotation Number : CG9990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039594
Gbrowse : chr3R:24501076-24521661 (+) // 100.0 //
Probeset : 1630784_a_at
Accessions : protein= NP_001163763; /// NP_651628; /// NP_733255;, nucleotide= NM_001170292; /// NM_143371; /// NM_170376;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0039594.
BDGP gene expression has embryonic in situ data for CG9990: 17 pix of staining in 10 body parts.
Homophila reports that CG9990 is a close match (3e-11) to human gene ABCB11;BSEP;PFIC2;SPGP (NP_003733), a gene associated with Cholestasis, progressive familial intrahepatic 2, 601847 (3).
VDRC has 2 RNAi stocks for FBgn0039594 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	35 ± 6	4 of 4	0.10	Down
Head	777 ± 52	4 of 4	2.70	Up
Eye	730 ± 44	4 of 4	2.52	Up
Thoracicoabdominal ganglion	15 ± 3	4 of 4	0.10	Down
Salivary gland	58 ± 6	4 of 4	0.20	Down
Crop	3302 ± 147	4 of 4	11.40	Up
Midgut	135 ± 4	4 of 4	0.50	Down
Tubule	49 ± 4	4 of 4	0.20	Down
Hindgut	1799 ± 41	4 of 4	6.20	Up
Heart	67 ± 2	4 of 4	0.23	Down
Fat body	130 ± 12	4 of 4	0.45	Down
Ovary	53 ± 6	4 of 4	0.20	Down
Testis	28 ± 2	4 of 4	0.10	Down
Male accessory glands	22 ± 3	4 of 4	0.10	Down
Virgin spermatheca	102 ± 6	4 of 4	0.35	Down
Mated spermatheca	150 ± 6	4 of 4	0.52	Down
Adult carcass	823 ± 28	4 of 4	2.80	Up
Larval CNS	71 ± 13	4 of 4	0.25	Down
Larval Salivary gland	9 ± 3	1 of 4	0.03	Down
Larval midgut	59 ± 4	4 of 4	0.20	Down
Larval tubule	6 ± 1	1 of 4	0.00	Down
Larval hindgut	835 ± 39	4 of 4	2.89	Up
Larval fat body	59 ± 11	4 of 4	0.20	Down
Larval trachea	1338 ± 26	4 of 4	4.63	Up
Larval carcass	169 ± 12	4 of 4	0.59	Down
S2 cells (growing)	19 ± 0	4 of 4	0.07	Down
Whole fly	289 ± 13	4 of 4

Looking for CG9990-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720