FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9995-RA through 18771 annotations produced 1 hits

huntingtin (htt):

Annotation Number : CG9995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027655
Gbrowse : chr3R:24521963-24560073 (+) // 100.0 //
Probeset : 1641422_at
Accessions : protein= NP_651629;, nucleotide= NM_143372;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0027655.
Homophila reports that CG9995 is a close match (4e-19) to human gene HD;IT15 (NP_002102), a gene associated with Huntington disease (3).
TRiP has 1 RNAi stocks for FBgn0027655 available for purchase.
VDRC has 5 RNAi stocks for FBgn0027655 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	208 ± 10	4 of 4	2.80	Up
Head	141 ± 9	4 of 4	1.90	Up
Eye	139 ± 8	4 of 4	1.89	Up
Thoracicoabdominal ganglion	230 ± 11	4 of 4	3.10	Up
Salivary gland	227 ± 5	4 of 4	3.08	Up
Crop	115 ± 4	4 of 4	1.60	Up
Midgut	112 ± 7	4 of 4	1.50	Up
Tubule	124 ± 6	4 of 4	1.70	Up
Hindgut	137 ± 8	4 of 4	1.90	Up
Heart	113 ± 6	4 of 4	1.53	Up
Fat body	124 ± 8	4 of 4	1.68	Up
Ovary	67 ± 3	4 of 4	0.90	None
Testis	36 ± 2	4 of 4	0.50	Down
Male accessory glands	129 ± 2	4 of 4	1.80	Up
Virgin spermatheca	192 ± 14	4 of 4	2.61	Up
Mated spermatheca	147 ± 3	4 of 4	2.00	Up
Adult carcass	96 ± 6	4 of 4	1.30	None
Larval CNS	112 ± 12	4 of 4	1.52	Up
Larval Salivary gland	106 ± 9	4 of 4	1.44	Up
Larval midgut	103 ± 3	4 of 4	1.41	Up
Larval tubule	118 ± 6	4 of 4	1.60	Up
Larval hindgut	122 ± 13	4 of 4	1.66	Up
Larval fat body	97 ± 5	4 of 4	1.30	None
Larval trachea	153 ± 15	4 of 4	2.08	Up
Larval carcass	97 ± 5	4 of 4	1.32	None
S2 cells (growing)	149 ± 4	4 of 4	2.03	Up
Whole fly	73 ± 8	4 of 4

Looking for CG9995-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720