FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9996-RA through 18771 annotations produced 1 hits

(CG9996):

Annotation Number : CG9996
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039273
Gbrowse : chr3R:20898611-20899908 (-) // 100.0 //
Probeset : 1626942_at
Accessions : protein= NP_001097911;, nucleotide= NM_001104441;
Interpro : "0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity
FlyMine data for FBgn0039273.
Homophila reports that CG9996 is a close match (7e-13) to human gene KIAA0609;LARGE;MDC1D (NP_598397), a gene associated with Muscular dystrophy, congenital, type 1D, 608840 (3);Walker-Warburg syndrome, 236670 (3).
VDRC has 3 RNAi stocks for FBgn0039273 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	50 ± 4	4 of 4	0.80	Down
Head	37 ± 2	4 of 4	0.60	Down
Eye	78 ± 4	4 of 4	1.20	None
Thoracicoabdominal ganglion	39 ± 2	4 of 4	0.60	Down
Salivary gland	72 ± 2	4 of 4	1.11	None
Crop	39 ± 5	4 of 4	0.60	Down
Midgut	31 ± 2	4 of 4	0.50	Down
Tubule	33 ± 2	3 of 4	0.50	Down
Hindgut	34 ± 2	4 of 4	0.50	Down
Heart	12 ± 2	4 of 4	0.19	Down
Fat body	16 ± 4	4 of 4	0.25	Down
Ovary	185 ± 5	4 of 4	2.80	Up
Testis	37 ± 3	4 of 4	0.60	Down
Male accessory glands	44 ± 1	4 of 4	0.70	Down
Virgin spermatheca	21 ± 3	4 of 4	0.32	Down
Mated spermatheca	26 ± 1	4 of 4	0.40	Down
Adult carcass	24 ± 2	2 of 4	0.40	Down
Larval CNS	158 ± 5	4 of 4	2.40	Up
Larval Salivary gland	35 ± 4	4 of 4	0.53	Down
Larval midgut	18 ± 3	3 of 4	0.29	Down
Larval tubule	6 ± 0	1 of 4	0.10	Down
Larval hindgut	22 ± 1	4 of 4	0.34	Down
Larval fat body	15 ± 1	1 of 4	0.20	Down
Larval trachea	128 ± 13	4 of 4	1.95	Up
Larval carcass	31 ± 5	4 of 4	0.47	Down
S2 cells (growing)	147 ± 3	4 of 4	2.24	Up
Whole fly	65 ± 2	4 of 4

Looking for CG9996-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720