FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9999-RA through 18771 annotations produced 1 hits

Segregation distorter (RanGap):

Annotation Number : CG9999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003346
Gbrowse : chr2L:19442040-19447322 (+) // 100.0 //
Probeset : 1623819_at
Accessions : protein= NP_476712;, nucleotide= NM_057364;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005098 // Ran GTPase activator activity
FlyMine data for FBgn0003346.
BDGP gene expression has embryonic in situ data for Sd: 41 pix of staining in 16 body parts.
BioGrid reports that CG9999 interacts with CG10480 CG1404 .
TRiP has 1 RNAi stocks for FBgn0003346 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003346 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	52 ± 0	4 of 4	0.20	Down
Head	63 ± 2	4 of 4	0.20	Down
Eye	64 ± 2	4 of 4	0.24	Down
Thoracicoabdominal ganglion	84 ± 3	4 of 4	0.30	Down
Salivary gland	43 ± 0	3 of 4	0.16	Down
Crop	78 ± 1	4 of 4	0.30	Down
Midgut	73 ± 7	4 of 4	0.30	Down
Tubule	60 ± 11	4 of 4	0.20	Down
Hindgut	113 ± 1	4 of 4	0.40	Down
Heart	58 ± 5	4 of 4	0.21	Down
Fat body	73 ± 13	4 of 4	0.27	Down
Ovary	560 ± 16	4 of 4	2.00	Up
Testis	222 ± 16	4 of 4	0.80	Down
Male accessory glands	118 ± 6	4 of 4	0.40	Down
Virgin spermatheca	79 ± 3	4 of 4	0.29	Down
Mated spermatheca	94 ± 6	4 of 4	0.34	Down
Adult carcass	60 ± 3	4 of 4	0.20	Down
Larval CNS	777 ± 35	4 of 4	2.82	Up
Larval Salivary gland	213 ± 13	4 of 4	0.77	Down
Larval midgut	71 ± 1	4 of 4	0.26	Down
Larval tubule	74 ± 4	4 of 4	0.30	Down
Larval hindgut	117 ± 6	4 of 4	0.43	Down
Larval fat body	110 ± 10	4 of 4	0.40	Down
Larval trachea	309 ± 35	4 of 4	1.12	None
Larval carcass	163 ± 9	4 of 4	0.59	Down
S2 cells (growing)	347 ± 9	4 of 4	1.26	Up
Whole fly	276 ± 9	4 of 4

Looking for CG9999-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720