FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CR_TC_AT27057 through 18771 annotations produced 2 hits

(CG7650):

Annotation Number : CR_tc_AT27057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036519
Gbrowse : chr3L:15602435-15603463 (-) // 100.0 //
Probeset : 1627214_s_at
Accessions : protein= NP_648786;, nucleotide= NM_140529;
FlyMine data for FBgn0036519.
VDRC has 2 RNAi stocks for FBgn0036519 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 1	3 of 4	0.70	Down
Head	16 ± 3	2 of 4	0.50	Down
Eye	39 ± 4	4 of 4	1.19	None
Thoracicoabdominal ganglion	12 ± 2	1 of 4	0.40	Down
Salivary gland	25 ± 5	0 of 4	0.75	None
Crop	13 ± 2	0 of 4	0.40	Down
Midgut	16 ± 2	0 of 4	0.50	Down
Tubule	7 ± 0	0 of 4	0.20	Down
Hindgut	18 ± 2	3 of 4	0.50	Down
Heart	14 ± 1	4 of 4	0.45	Down
Fat body	9 ± 3	0 of 4	0.28	Down
Ovary	46 ± 4	4 of 4	1.40	None
Testis	66 ± 2	4 of 4	2.00	Up
Male accessory glands	13 ± 4	1 of 4	0.40	Down
Virgin spermatheca	4 ± 0	0 of 4	0.14	Down
Mated spermatheca	3 ± 1	0 of 4	0.11	Down
Adult carcass	10 ± 2	0 of 4	0.30	Down
Larval CNS	37 ± 9	3 of 4	1.12	None
Larval Salivary gland	15 ± 3	0 of 4	0.47	Down
Larval midgut	8 ± 2	0 of 4	0.25	Down
Larval tubule	15 ± 2	0 of 4	0.50	Down
Larval hindgut	16 ± 1	2 of 4	0.48	Down
Larval fat body	25 ± 1	1 of 4	0.80	None
Larval trachea	18 ± 4	4 of 4	0.56	Down
Larval carcass	14 ± 1	2 of 4	0.42	Down
S2 cells (growing)	38 ± 3	4 of 4	1.14	None
Whole fly	33 ± 3	4 of 4

(CG7650):

Annotation Number : CR_tc_AT27057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036519
Gbrowse : chr3L:15602435-15603463 (-) // 100.0 //
Probeset : 1633191_at
Accessions : protein= NP_648786;, nucleotide= NM_140529;
FlyMine data for FBgn0036519.
VDRC has 2 RNAi stocks for FBgn0036519 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 0	4 of 4	0.60	Down
Head	17 ± 1	4 of 4	0.40	Down
Eye	25 ± 1	4 of 4	0.58	Down
Thoracicoabdominal ganglion	10 ± 1	4 of 4	0.20	Down
Salivary gland	9 ± 3	1 of 4	0.22	Down
Crop	22 ± 3	4 of 4	0.50	Down
Midgut	17 ± 0	4 of 4	0.40	Down
Tubule	10 ± 2	2 of 4	0.20	Down
Hindgut	18 ± 1	4 of 4	0.40	Down
Heart	11 ± 1	3 of 4	0.26	Down
Fat body	14 ± 6	4 of 4	0.33	Down
Ovary	110 ± 7	4 of 4	2.50	Up
Testis	182 ± 11	4 of 4	4.20	Up
Male accessory glands	10 ± 3	0 of 4	0.20	Down
Virgin spermatheca	4 ± 1	0 of 4	0.10	Down
Mated spermatheca	7 ± 1	3 of 4	0.17	Down
Adult carcass	6 ± 1	0 of 4	0.20	Down
Larval CNS	79 ± 13	4 of 4	1.82	Up
Larval Salivary gland	21 ± 1	4 of 4	0.50	Down
Larval midgut	17 ± 2	4 of 4	0.39	Down
Larval tubule	19 ± 3	4 of 4	0.40	Down
Larval hindgut	23 ± 1	4 of 4	0.54	Down
Larval fat body	29 ± 9	3 of 4	0.70	None
Larval trachea	23 ± 2	4 of 4	0.55	Down
Larval carcass	19 ± 1	4 of 4	0.46	Down
S2 cells (growing)	29 ± 8	4 of 4	0.68	None
Whole fly	43 ± 3	4 of 4

Looking for CR_tc_AT27057. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720