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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT26204 through 18771 annotations produced 1 hits



B4 (B4):

Annotation Number : CT26204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023407
Gbrowse : chr2L:13546891-13549321 (-) // 100.0 //
Probeset : 1627501_s_at
Accessions : protein= NP_477325; /// NP_723823;, nucleotide= NM_057977; /// NM_165046;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0023407.
TRiP has 1 RNAi stocks for FBgn0023407 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 24 of 4 6.30Up
Head1 ± 00 of 4 0.40None
Eye6 ± 00 of 4 1.46None
Thoracicoabdominal ganglion20 ± 40 of 4 4.60Up
Salivary gland4 ± 00 of 4 0.97None
Crop5 ± 20 of 4 1.20None
Midgut3 ± 10 of 4 0.70None
Tubule1 ± 00 of 4 0.30Down
Hindgut6 ± 20 of 4 1.50None
Heart5 ± 10 of 4 1.27None
Fat body2 ± 00 of 4 0.56None
Ovary4 ± 00 of 4 0.90None
Testis1 ± 00 of 4 0.40None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.35None
Mated spermatheca1 ± 00 of 4 0.43None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS15 ± 32 of 4 3.48Up
Larval Salivary gland2 ± 00 of 4 0.45None
Larval midgut3 ± 10 of 4 0.74None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut2 ± 00 of 4 0.48None
Larval fat body3 ± 10 of 4 0.70None
Larval trachea2 ± 30 of 4 0.65None
Larval carcass1 ± 00 of 4 0.35None
S2 cells (growing)35 ± 23 of 4 8.08Up
Whole fly4 ± 10 of 4

Looking for CT26204. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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