FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CT29602 through 18771 annotations produced 1 hits

Nipped (Nipped-A):

Annotation Number : CT29602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053554
Gbrowse : chr2R:1125748-1138471 (-) // 100.0 //
Probeset : 1624771_at
Accessions : protein= NP_001014499; /// NP_001097192;, nucleotide= NM_001014499; /// NM_001103722;
Pathway : engulfment // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotati
Interpro : 0000123 // histone acetyltransferase complex // inferred from direct assay /// 0000124 // SAGA complex // non-traceable
FlyMine data for FBgn0053554.
TRiP has 3 RNAi stocks for FBgn0053554 available for purchase.
VDRC has 5 RNAi stocks for FBgn0053554 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 0	2 of 4	2.30	Up
Head	3 ± 1	0 of 4	0.90	None
Eye	1 ± 0	0 of 4	0.34	None
Thoracicoabdominal ganglion	4 ± 2	0 of 4	1.20	None
Salivary gland	6 ± 2	0 of 4	1.75	None
Crop	3 ± 0	0 of 4	0.80	None
Midgut	6 ± 0	0 of 4	1.60	None
Tubule	2 ± 0	0 of 4	0.70	None
Hindgut	4 ± 0	1 of 4	1.20	None
Heart	4 ± 0	0 of 4	1.05	None
Fat body	5 ± 1	0 of 4	1.26	None
Ovary	3 ± 1	0 of 4	1.00	None
Testis	3 ± 0	1 of 4	0.80	None
Male accessory glands	10 ± 1	1 of 4	2.60	Up
Virgin spermatheca	3 ± 1	0 of 4	0.90	None
Mated spermatheca	3 ± 0	0 of 4	0.88	None
Adult carcass	3 ± 1	0 of 4	0.80	None
Larval CNS	5 ± 1	2 of 4	1.52	None
Larval Salivary gland	3 ± 2	0 of 4	0.82	None
Larval midgut	5 ± 1	2 of 4	1.41	None
Larval tubule	3 ± 1	0 of 4	1.00	None
Larval hindgut	2 ± 0	1 of 4	0.61	None
Larval fat body	9 ± 2	0 of 4	2.30	None
Larval trachea	4 ± 2	1 of 4	1.14	None
Larval carcass	3 ± 1	1 of 4	0.89	None
S2 cells (growing)	4 ± 1	0 of 4	1.18	None
Whole fly	3 ± 0	0 of 4

Looking for CT29602. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720