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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT31644 through 18771 annotations produced 1 hits



ia2 (ia2):

Annotation Number : CT31644
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031294
Gbrowse : chr2L:1033539-1043197 (-) // 100.0 //
Probeset : 1635042_s_at
Accessions : protein= NP_608562; /// NP_722672;, nucleotide= NM_134718; /// NM_164401;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0031294.
TRiP has 1 RNAi stocks for FBgn0031294 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 44 of 4 9.50Up
Head14 ± 31 of 4 3.00None
Eye2 ± 00 of 4 0.50None
Thoracicoabdominal ganglion20 ± 54 of 4 4.50None
Salivary gland11 ± 40 of 4 2.53None
Crop5 ± 22 of 4 1.20None
Midgut6 ± 20 of 4 1.30None
Tubule2 ± 00 of 4 0.60Down
Hindgut5 ± 10 of 4 1.20None
Heart5 ± 20 of 4 1.25None
Fat body4 ± 10 of 4 0.87None
Ovary5 ± 00 of 4 1.10None
Testis5 ± 10 of 4 1.10None
Male accessory glands18 ± 51 of 4 4.00None
Virgin spermatheca3 ± 10 of 4 0.84None
Mated spermatheca4 ± 10 of 4 0.95None
Adult carcass10 ± 10 of 4 2.20Up
Larval CNS3 ± 30 of 4 0.73None
Larval Salivary gland10 ± 10 of 4 2.31None
Larval midgut5 ± 20 of 4 1.13None
Larval tubule4 ± 10 of 4 1.00None
Larval hindgut5 ± 20 of 4 1.07None
Larval fat body4 ± 20 of 4 0.80None
Larval trachea2 ± 10 of 4 0.44None
Larval carcass4 ± 10 of 4 0.92None
S2 cells (growing)1 ± 00 of 4 0.22None
Whole fly4 ± 10 of 4

Looking for CT31644. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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