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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT32271 through 18771 annotations produced 1 hits



(CG34247):

Annotation Number : CT32271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085276
Gbrowse : chr3L:16254356-16254605 (-) // 100.0 //
Probeset : 1627160_at
Accessions : protein= NP_001097617;, nucleotide= NM_001104147;
FlyMine data for FBgn0085276.
VDRC has 1 RNAi stocks for FBgn0085276 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.10None
Head6 ± 20 of 4 2.30None
Eye10 ± 10 of 4 3.84Up
Thoracicoabdominal ganglion4 ± 10 of 4 1.60None
Salivary gland11 ± 20 of 4 4.21None
Crop7 ± 20 of 4 2.80None
Midgut24 ± 30 of 4 8.90Up
Tubule9 ± 00 of 4 3.30Up
Hindgut6 ± 20 of 4 2.40None
Heart2 ± 10 of 4 1.02None
Fat body27 ± 50 of 410.07Up
Ovary1 ± 00 of 4 0.60None
Testis7 ± 20 of 4 2.70None
Male accessory glands11 ± 30 of 4 4.10None
Virgin spermatheca2 ± 00 of 4 0.86None
Mated spermatheca2 ± 00 of 4 0.96None
Adult carcass11 ± 30 of 4 4.10None
Larval CNS1 ± 00 of 4 0.69None
Larval Salivary gland2 ± 00 of 4 1.06None
Larval midgut31 ± 50 of 411.51Up
Larval tubule7 ± 20 of 4 2.70None
Larval hindgut7 ± 30 of 4 2.81None
Larval fat body15 ± 40 of 4 5.60None
Larval trachea6 ± 40 of 4 2.53None
Larval carcass2 ± 00 of 4 0.77None
S2 cells (growing)8 ± 10 of 4 3.19Up
Whole fly2 ± 00 of 4

Looking for CT32271. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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