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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT34900 through 18771 annotations produced 1 hits



CG17757 (CG34401):

Annotation Number : CT34900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085430
Gbrowse : chrX:18772980-18773253 (+) // 100.0 //
Probeset : 1633173_s_at
Accessions : protein= NP_652493;, nucleotide= NM_144236;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0085430.
VDRC has 7 RNAi stocks for FBgn0085430 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 10 of 4 1.00None
Head9 ± 20 of 4 0.50Down
Eye16 ± 21 of 4 0.86None
Thoracicoabdominal ganglion10 ± 30 of 4 0.50None
Salivary gland28 ± 80 of 4 1.47None
Crop14 ± 00 of 4 0.70Down
Midgut47 ± 31 of 4 2.50Up
Tubule13 ± 00 of 4 0.70Down
Hindgut10 ± 20 of 4 0.50Down
Heart13 ± 30 of 4 0.69None
Fat body23 ± 90 of 4 1.24None
Ovary13 ± 30 of 4 0.70None
Testis14 ± 20 of 4 0.80None
Male accessory glands18 ± 40 of 4 0.90None
Virgin spermatheca8 ± 20 of 4 0.42Down
Mated spermatheca4 ± 10 of 4 0.24Down
Adult carcass14 ± 30 of 4 0.80None
Larval CNS13 ± 21 of 4 0.70Down
Larval Salivary gland27 ± 40 of 4 1.46None
Larval midgut60 ± 33 of 4 3.15Up
Larval tubule20 ± 20 of 4 1.10None
Larval hindgut21 ± 11 of 4 1.11None
Larval fat body44 ± 81 of 4 2.30None
Larval trachea21 ± 11 of 4 1.11None
Larval carcass37 ± 13 of 4 1.97Up
S2 cells (growing)24 ± 12 of 4 1.26None
Whole fly19 ± 10 of 4

Looking for CT34900. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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