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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT35296 through 18771 annotations produced 1 hits



(CG33557):

Annotation Number : CT35296
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053557
Gbrowse : chrX:9903267-9903498 (+) // 100.0 //
Probeset : 1635092_at
Accessions : protein= NP_001014730;, nucleotide= NM_001014730;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0053557.
VDRC has 3 RNAi stocks for FBgn0053557 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head4 ± 10 of 4 1.30None
Eye0 ± 00 of 4 0.20None
Thoracicoabdominal ganglion4 ± 10 of 4 1.20None
Salivary gland11 ± 30 of 4 3.05None
Crop3 ± 20 of 4 1.00None
Midgut3 ± 10 of 4 0.80None
Tubule4 ± 00 of 4 1.10None
Hindgut4 ± 11 of 4 1.20None
Heart5 ± 10 of 4 1.41None
Fat body5 ± 40 of 4 1.35None
Ovary2 ± 00 of 4 0.80None
Testis16 ± 24 of 4 4.30Up
Male accessory glands15 ± 11 of 4 4.10Up
Virgin spermatheca2 ± 00 of 4 0.71None
Mated spermatheca5 ± 10 of 4 1.38None
Adult carcass8 ± 30 of 4 2.30None
Larval CNS6 ± 31 of 4 1.67None
Larval Salivary gland2 ± 10 of 4 0.66None
Larval midgut1 ± 00 of 4 0.27None
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut2 ± 00 of 4 0.69None
Larval fat body3 ± 00 of 4 0.80None
Larval trachea1 ± 00 of 4 0.32None
Larval carcass3 ± 10 of 4 0.97None
S2 cells (growing)2 ± 00 of 4 0.57None
Whole fly3 ± 10 of 4

Looking for CT35296. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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