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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CT35796 through 18771 annotations produced 1 hits

BG642163 (BG642163):

Annotation Number : CT35796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083938
Gbrowse : chr2L:4640821-4641962 (+) // 100.0 //
Probeset : 1640506_at
Accessions : protein= NP_001036331;, nucleotide= NM_001042866;
FlyMine data for FBgn0083938.
VDRC has 3 RNAi stocks for FBgn0083938 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.10Down
Head6 20 of 4 0.10Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion7 20 of 4 0.10Down
Salivary gland13 40 of 4 0.14Down
Crop16 21 of 4 0.20Down
Midgut9 10 of 4 0.10Down
Tubule7 00 of 4 0.10Down
Hindgut13 11 of 4 0.10Down
Heart2 10 of 4 0.03Down
Fat body7 50 of 4 0.08Down
Ovary2 10 of 4 0.00Down
Testis15 32 of 4 0.20Down
Male accessory glands6790 3024 of 472.60Up
Virgin spermatheca8 00 of 4 0.09Down
Mated spermatheca8 10 of 4 0.09Down
Adult carcass18 21 of 4 0.20Down
Larval CNS6 10 of 4 0.07Down
Larval Salivary gland5 10 of 4 0.06Down
Larval midgut13 01 of 4 0.15Down
Larval tubule10 11 of 4 0.10Down
Larval hindgut6 10 of 4 0.07Down
Larval fat body11 30 of 4 0.10Down
Larval trachea1 00 of 4 0.02Down
Larval carcass10 21 of 4 0.11Down
S2 cells (growing)7 10 of 4 0.08Down
Whole fly93 64 of 4

Looking for CT35796. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime