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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT36016 through 18771 annotations produced 1 hits



(CG32626):

Annotation Number : CT36016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052626
Gbrowse : chrX:13733563-13733803 (-) // 100.0 //
Probeset : 1631487_s_at
Accessions : protein= NP_572931; /// NP_727739; /// NP_727740; /// NP_727741;, nucleotide= NM_132703; /// NM_167384; /// NM_167385; /// NM_167386;
Interpro : "0003876 // AMP deaminase activity // inferred from sequence or structural similarity /// 0003876 // AMP deaminase activ
FlyMine data for FBgn0052626.
BDGP gene expression has embryonic in situ data for CG32626: 36 pix of staining in 18 body parts.
TRiP has 2 RNAi stocks for FBgn0052626 available for purchase.
VDRC has 4 RNAi stocks for FBgn0052626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 20 of 4 0.60None
Head8 ± 00 of 4 0.60Down
Eye6 ± 10 of 4 0.51Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.70None
Salivary gland89 ± 24 of 4 6.77Up
Crop26 ± 22 of 4 2.00Up
Midgut14 ± 20 of 4 1.10None
Tubule21 ± 20 of 4 1.60Up
Hindgut50 ± 24 of 4 3.90Up
Heart10 ± 13 of 4 0.81None
Fat body7 ± 30 of 4 0.54Down
Ovary3 ± 10 of 4 0.30Down
Testis20 ± 24 of 4 1.60Up
Male accessory glands19 ± 11 of 4 1.50None
Virgin spermatheca12 ± 30 of 4 0.98None
Mated spermatheca16 ± 12 of 4 1.27None
Adult carcass26 ± 24 of 4 2.00Up
Larval CNS7 ± 30 of 4 0.59None
Larval Salivary gland6 ± 20 of 4 0.50None
Larval midgut11 ± 40 of 4 0.84None
Larval tubule42 ± 44 of 4 3.20Up
Larval hindgut32 ± 34 of 4 2.49Up
Larval fat body15 ± 41 of 4 1.20None
Larval trachea5 ± 10 of 4 0.44Down
Larval carcass39 ± 101 of 4 2.99None
S2 cells (growing)7 ± 10 of 4 0.54Down
Whole fly13 ± 12 of 4

Looking for CT36016. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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