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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT36275 through 18771 annotations produced 1 hits



(CG32758):

Annotation Number : CT36275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052758
Gbrowse : chrX:5614504-5614888 (-) // 100.0 //
Probeset : 1627179_s_at
Accessions : protein= NP_727023;, nucleotide= NM_167045;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0052758.
TRiP has 1 RNAi stocks for FBgn0052758 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 34 of 4 3.30Up
Head30 ± 44 of 4 1.60None
Eye33 ± 44 of 4 1.73Up
Thoracicoabdominal ganglion31 ± 44 of 4 1.60None
Salivary gland21 ± 23 of 4 1.10None
Crop13 ± 14 of 4 0.70Down
Midgut10 ± 23 of 4 0.50Down
Tubule4 ± 01 of 4 0.20Down
Hindgut19 ± 24 of 4 1.00None
Heart30 ± 24 of 4 1.58Up
Fat body29 ± 14 of 4 1.54Up
Ovary45 ± 24 of 4 2.40Up
Testis2 ± 01 of 4 0.10Down
Male accessory glands10 ± 21 of 4 0.50Down
Virgin spermatheca6 ± 02 of 4 0.33Down
Mated spermatheca4 ± 11 of 4 0.23Down
Adult carcass18 ± 42 of 4 1.00None
Larval CNS45 ± 94 of 4 2.37Up
Larval Salivary gland8 ± 31 of 4 0.42Down
Larval midgut12 ± 23 of 4 0.67Down
Larval tubule13 ± 04 of 4 0.70Down
Larval hindgut15 ± 14 of 4 0.79None
Larval fat body195 ± 194 of 410.20Up
Larval trachea10 ± 43 of 4 0.55Down
Larval carcass12 ± 14 of 4 0.63Down
S2 cells (growing)67 ± 34 of 4 3.53Up
Whole fly19 ± 14 of 4

Looking for CT36275. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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