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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT40737 through 18771 annotations produced 1 hits



(CG18420):

Annotation Number : CT40737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028866
Gbrowse : chr2L:14795367-14796537 (-) // 100.0 //
Probeset : 1624642_at
Accessions : protein= NP_995715;, nucleotide= NM_205993;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0028866.
VDRC has 2 RNAi stocks for FBgn0028866 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 02 of 4 5.00Up
Head1 00 of 4 0.90None
Eye1 00 of 4 1.00None
Thoracicoabdominal ganglion8 00 of 4 5.90Up
Salivary gland3 20 of 4 2.51None
Crop1 10 of 4 1.30None
Midgut3 10 of 4 2.10None
Tubule2 00 of 4 1.80Up
Hindgut1 10 of 4 1.20None
Heart2 00 of 4 1.71None
Fat body7 31 of 4 5.15Up
Ovary1 00 of 4 1.20None
Testis1 00 of 4 0.90None
Male accessory glands2 00 of 4 1.50None
Virgin spermatheca1 00 of 4 0.66None
Mated spermatheca2 00 of 4 1.49None
Adult carcass1 00 of 4 1.30None
Larval CNS4 20 of 4 2.78None
Larval Salivary gland0 00 of 4 0.63None
Larval midgut1 00 of 4 1.00None
Larval tubule0 00 of 4 0.40None
Larval hindgut0 00 of 4 0.54None
Larval fat body4 20 of 4 2.90None
Larval trachea1 10 of 4 0.93None
Larval carcass1 00 of 4 0.75None
S2 cells (growing)0 00 of 4 0.29None
Whole fly1 00 of 4

Looking for CT40737. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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