FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CT40960 through 18771 annotations produced 1 hits

seven-up (svp):

Annotation Number : CT40960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003651
Gbrowse : chr3R:8126904-8127572 (+) // 100.0 //
Probeset : 1626594_s_at
Accessions : protein= NP_524325; /// NP_731681; /// NP_731682;, nucleotide= NM_079601; /// NM_169458; /// NM_169459;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // inferred from
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003651.
BDGP gene expression has embryonic in situ data for svp: 10 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0003651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003651 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 0	4 of 4	1.80	Up
Head	22 ± 4	4 of 4	1.80	None
Eye	12 ± 1	3 of 4	0.98	None
Thoracicoabdominal ganglion	23 ± 2	4 of 4	1.90	Up
Salivary gland	13 ± 3	1 of 4	1.06	None
Crop	31 ± 2	4 of 4	2.50	Up
Midgut	3 ± 1	0 of 4	0.30	Down
Tubule	4 ± 0	0 of 4	0.40	Down
Hindgut	20 ± 1	4 of 4	1.70	Up
Heart	19 ± 0	4 of 4	1.60	Up
Fat body	78 ± 21	4 of 4	6.35	Up
Ovary	3 ± 0	0 of 4	0.30	Down
Testis	12 ± 1	4 of 4	1.00	None
Male accessory glands	7 ± 1	0 of 4	0.60	Down
Virgin spermatheca	15 ± 1	4 of 4	1.27	None
Mated spermatheca	19 ± 0	4 of 4	1.60	Up
Adult carcass	57 ± 7	4 of 4	4.60	Up
Larval CNS	14 ± 1	4 of 4	1.15	None
Larval Salivary gland	7 ± 3	0 of 4	0.56	None
Larval midgut	7 ± 1	0 of 4	0.56	None
Larval tubule	10 ± 2	1 of 4	0.80	None
Larval hindgut	6 ± 1	1 of 4	0.51	Down
Larval fat body	74 ± 5	4 of 4	6.00	Up
Larval trachea	5 ± 1	1 of 4	0.46	Down
Larval carcass	5 ± 1	1 of 4	0.45	Down
S2 cells (growing)	1 ± 0	0 of 4	0.15	Down
Whole fly	12 ± 1	3 of 4

Looking for CT40960. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720