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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CT42230 through 18771 annotations produced 1 hits



(CG18636):

Annotation Number : CT42230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032551
Gbrowse : chr2L:14783341-14786697 (-) // 100.0 //
Probeset : 1637938_at
Accessions : protein= NP_995714;, nucleotide= NM_205992;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0032551.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.80None
Head3 ± 10 of 4 1.80None
Eye2 ± 10 of 4 1.39None
Thoracicoabdominal ganglion2 ± 10 of 4 1.50None
Salivary gland1 ± 00 of 4 1.07None
Crop2 ± 10 of 4 1.40None
Midgut0 ± 00 of 4 0.30None
Tubule1 ± 00 of 4 0.70Down
Hindgut1 ± 00 of 4 0.80None
Heart1 ± 00 of 4 1.03None
Fat body1 ± 10 of 4 0.78None
Ovary0 ± 00 of 4 0.30None
Testis3 ± 10 of 4 1.90None
Male accessory glands0 ± 00 of 4 0.40None
Virgin spermatheca2 ± 10 of 4 1.32None
Mated spermatheca1 ± 00 of 4 1.00None
Adult carcass5 ± 30 of 4 3.00None
Larval CNS3 ± 30 of 4 1.85None
Larval Salivary gland2 ± 00 of 4 1.50None
Larval midgut1 ± 00 of 4 0.88None
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.79None
Larval fat body6 ± 20 of 4 3.50None
Larval trachea0 ± 00 of 4 0.21None
Larval carcass0 ± 00 of 4 0.44None
S2 cells (growing)1 ± 00 of 4 0.82None
Whole fly1 ± 10 of 4

Looking for CT42230. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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