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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000014 through 18771 annotations produced 2 hits



abdominal A (abd-A):

Annotation Number : CG10325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000014
Gbrowse : chr3R:12635358-12654737 (-) // 100.0 //
Probeset : 1636558_a_at
Accessions : protein= NP_001163632; /// NP_476693; /// NP_732176;, nucleotide= NM_001170161; /// NM_057345; /// NM_169733;
Pathway : DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 000
FlyMine data for FBgn0000014.
BDGP gene expression has embryonic in situ data for abd-A: 20 pix of staining in 13 body parts.
Homophila reports that CG10325 is a close match (3e-11) to human gene BDSD;HOX4I;HOXD13;SPD (NP_000514), a gene associated with Brachydactyly, type D, 113200 (3);Brachydactyly, type E, 113300 (3);Brachydactyly-syndactyly syndrome, 610713 (3);Syndactyly, type V, 186300 (3);Synpolydactyly with foot anomalies, 186000 (3);Synpolydactyly, type II, 186000 (3).
BioGrid reports that CG10325 interacts with CG11525 CG10388 CG10388 CG11648 CG11648 CG11648 CG17117 CG17117 CG1264 CG1264 CG10334 CG8573 CG8573 .
TRiP has 2 RNAi stocks for FBgn0000014 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000014 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head2 10 of 4 0.40None
Eye1 00 of 4 0.27None
Thoracicoabdominal ganglion16 40 of 4 2.50None
Salivary gland2 00 of 4 0.33None
Crop2 10 of 4 0.40None
Midgut3 10 of 4 0.60None
Tubule0 00 of 4 0.10Down
Hindgut3 10 of 4 0.50None
Heart6 20 of 4 1.05None
Fat body2 20 of 4 0.41None
Ovary2 00 of 4 0.30None
Testis20 10 of 4 3.20Up
Male accessory glands9 20 of 4 1.40None
Virgin spermatheca1 00 of 4 0.29None
Mated spermatheca5 20 of 4 0.82None
Adult carcass4 10 of 4 0.60None
Larval CNS21 60 of 4 3.27Up
Larval Salivary gland1 00 of 4 0.16None
Larval midgut2 00 of 4 0.31None
Larval tubule1 00 of 4 0.20None
Larval hindgut2 10 of 4 0.41None
Larval fat body58 63 of 4 9.00Up
Larval trachea72 94 of 411.17Up
Larval carcass42 60 of 4 6.54Up
S2 cells (growing)0 00 of 4 0.14Down
Whole fly6 10 of 4



abdominal A (abd-A):

Annotation Number : CG10325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000014
Gbrowse : chr3R:12633348-12655769 (-) // 99.89 //
Probeset : 1637813_at
Accessions : protein= NP_001163632; /// NP_476693; /// NP_732176;, nucleotide= NM_001170161; /// NM_057345; /// NM_169733;
Pathway : DNA-dependent // inferred from mutant phenotype /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006915 // apoptosis // inferred from mutant phenotype /// 000
FlyMine data for FBgn0000014.
BDGP gene expression has embryonic in situ data for abd-A: 20 pix of staining in 13 body parts.
Homophila reports that CG10325 is a close match (3e-11) to human gene BDSD;HOX4I;HOXD13;SPD (NP_000514), a gene associated with Brachydactyly, type D, 113200 (3);Brachydactyly, type E, 113300 (3);Brachydactyly-syndactyly syndrome, 610713 (3);Syndactyly, type V, 186300 (3);Synpolydactyly with foot anomalies, 186000 (3);Synpolydactyly, type II, 186000 (3).
BioGrid reports that CG10325 interacts with CG11525 CG10388 CG10388 CG11648 CG11648 CG11648 CG17117 CG17117 CG1264 CG1264 CG10334 CG8573 CG8573 .
TRiP has 2 RNAi stocks for FBgn0000014 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000014 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head3 10 of 4 0.10Down
Eye10 52 of 4 0.25Down
Thoracicoabdominal ganglion86 54 of 4 2.00Up
Salivary gland8 21 of 4 0.20Down
Crop6 21 of 4 0.20Down
Midgut26 24 of 4 0.60Down
Tubule3 00 of 4 0.10Down
Hindgut20 24 of 4 0.50Down
Heart111 114 of 4 2.55Up
Fat body21 44 of 4 0.49Down
Ovary18 14 of 4 0.40Down
Testis60 74 of 4 1.40None
Male accessory glands86 44 of 4 2.00Up
Virgin spermatheca787 364 of 418.02Up
Mated spermatheca948 944 of 421.71Up
Adult carcass85 34 of 4 2.00Up
Larval CNS118 174 of 4 2.71Up
Larval Salivary gland5 10 of 4 0.11Down
Larval midgut31 24 of 4 0.72Down
Larval tubule6 01 of 4 0.20Down
Larval hindgut33 34 of 4 0.76None
Larval fat body551 494 of 412.60Up
Larval trachea1433 544 of 432.82Up
Larval carcass795 894 of 418.22Up
S2 cells (growing)0 00 of 4 0.02Down
Whole fly43 34 of 4

Looking for FBgn0000014. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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