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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000015 through 18771 annotations produced 3 hits



Abdominal B (Abd-B):

Annotation Number : CT36635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000015
Gbrowse : chr3R:12788870-12789667 (-) // 100.0 //
Probeset : 1632781_s_at
Accessions : protein= NP_524896; /// NP_650577; /// NP_732180; /// NP_732181; /// NP_996220;, nucleotide= NM_080157; /// NM_142320; /// NM_169735; /// NM_169736; /// NM_206498;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : abdomen // inferred from mutant phenotype /// 0007385 // specification of segmental identity
FlyMine data for FBgn0000015.
TRiP has 2 RNAi stocks for FBgn0000015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 11 of 4 0.90None
Head7 ± 21 of 4 0.80None
Eye5 ± 10 of 4 0.58None
Thoracicoabdominal ganglion11 ± 11 of 4 1.30None
Salivary gland27 ± 30 of 4 3.14Up
Crop13 ± 33 of 4 1.50None
Midgut8 ± 10 of 4 0.90None
Tubule21 ± 12 of 4 2.40Up
Hindgut23 ± 03 of 4 2.60Up
Heart4 ± 20 of 4 0.47None
Fat body32 ± 163 of 4 3.71None
Ovary4 ± 00 of 4 0.50Down
Testis12 ± 01 of 4 1.40Up
Male accessory glands20 ± 11 of 4 2.30Up
Virgin spermatheca48 ± 64 of 4 5.42Up
Mated spermatheca44 ± 104 of 4 5.05Up
Adult carcass9 ± 30 of 4 1.10None
Larval CNS20 ± 74 of 4 2.34Up
Larval Salivary gland12 ± 61 of 4 1.35None
Larval midgut11 ± 01 of 4 1.31None
Larval tubule12 ± 22 of 4 1.40None
Larval hindgut14 ± 23 of 4 1.67None
Larval fat body13 ± 11 of 4 1.50None
Larval trachea11 ± 22 of 4 1.29None
Larval carcass17 ± 20 of 4 1.94Up
S2 cells (growing)7 ± 11 of 4 0.83None
Whole fly8 ± 01 of 4



Abdominal B (Abd-B):

Annotation Number : HDC14027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000015
Gbrowse : chr3R:12761521-12763830 (-) // 100.0 //
Probeset : 1627871_at
Accessions : protein= NP_524896; /// NP_650577; /// NP_732180; /// NP_732181; /// NP_996220;, nucleotide= NM_080157; /// NM_142320; /// NM_169735; /// NM_169736; /// NM_206498;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : abdomen // inferred from mutant phenotype /// 0007385 // specification of segmental identity
FlyMine data for FBgn0000015.
TRiP has 2 RNAi stocks for FBgn0000015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.50Down
Head7 ± 10 of 4 0.60Down
Eye3 ± 11 of 4 0.30Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.50Down
Salivary gland16 ± 50 of 4 1.31None
Crop7 ± 20 of 4 0.60None
Midgut18 ± 20 of 4 1.40None
Tubule10 ± 01 of 4 0.80Down
Hindgut15 ± 20 of 4 1.20None
Heart4 ± 10 of 4 0.35Down
Fat body8 ± 20 of 4 0.67Down
Ovary8 ± 10 of 4 0.60Down
Testis10 ± 11 of 4 0.80None
Male accessory glands16 ± 20 of 4 1.30None
Virgin spermatheca11 ± 40 of 4 0.89None
Mated spermatheca16 ± 33 of 4 1.26None
Adult carcass14 ± 40 of 4 1.10None
Larval CNS7 ± 10 of 4 0.55Down
Larval Salivary gland13 ± 11 of 4 1.08None
Larval midgut18 ± 10 of 4 1.43Up
Larval tubule5 ± 11 of 4 0.40Down
Larval hindgut14 ± 02 of 4 1.14None
Larval fat body10 ± 00 of 4 0.80None
Larval trachea7 ± 30 of 4 0.60None
Larval carcass11 ± 00 of 4 0.88None
S2 cells (growing)9 ± 20 of 4 0.71None
Whole fly12 ± 11 of 4



Abdominal B (Abd-B):

Annotation Number : CG11648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000015
Gbrowse : chr3R:12753398-12789667 (-) // 99.89 //
Probeset : 1641589_s_at
Accessions : protein= NP_524896; /// NP_650577; /// NP_732180; /// NP_732181; /// NP_996220;, nucleotide= NM_080157; /// NM_142320; /// NM_169735; /// NM_169736; /// NM_206498;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : abdomen // inferred from mutant phenotype /// 0007385 // specification of segmental identity
FlyMine data for FBgn0000015.
Homophila reports that CG11648 is a close match (6e-11) to human gene BDSD;HOX4I;HOXD13;SPD (NP_000514), a gene associated with Brachydactyly, type D, 113200 (3);Brachydactyly, type E, 113300 (3);Brachydactyly-syndactyly syndrome, 610713 (3);Syndactyly, type V, 186300 (3);Synpolydactyly with foot anomalies, 186000 (3);Synpolydactyly, type II, 186000 (3).
BioGrid reports that CG11648 interacts with CG1486 CG13728 CG2238 CG31973 CG5469 CG6932 CG7001 CG8825 CG10325 CG10325 CG10325 CG32443 CG32443 CG5109 CG5109 CG9495 CG10388 CG10388 CG10388 CG10325 CG10726 CG5229 CG11770 CG8651 .
TRiP has 2 RNAi stocks for FBgn0000015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head5 ± 00 of 4 0.10Down
Eye12 ± 23 of 4 0.26Down
Thoracicoabdominal ganglion54 ± 04 of 4 1.10None
Salivary gland8 ± 20 of 4 0.18Down
Crop3 ± 21 of 4 0.10Down
Midgut11 ± 04 of 4 0.20Down
Tubule12 ± 13 of 4 0.30Down
Hindgut535 ± 154 of 411.00Up
Heart5 ± 03 of 4 0.12Down
Fat body13 ± 33 of 4 0.28Down
Ovary3 ± 02 of 4 0.10Down
Testis47 ± 34 of 4 1.00None
Male accessory glands87 ± 94 of 4 1.80Up
Virgin spermatheca208 ± 104 of 4 4.27Up
Mated spermatheca265 ± 244 of 4 5.45Up
Adult carcass44 ± 83 of 4 0.90None
Larval CNS56 ± 114 of 4 1.17None
Larval Salivary gland5 ± 21 of 4 0.12Down
Larval midgut10 ± 14 of 4 0.21Down
Larval tubule11 ± 24 of 4 0.20Down
Larval hindgut282 ± 94 of 4 5.80Up
Larval fat body99 ± 54 of 4 2.00Up
Larval trachea1349 ± 744 of 427.70Up
Larval carcass319 ± 364 of 4 6.55Up
S2 cells (growing)2 ± 10 of 4 0.06Down
Whole fly48 ± 44 of 4

Looking for FBgn0000015. 3 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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