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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000024 through 18771 annotations produced 1 hits



acetylcholine esterase (Ace):

Annotation Number : CG17907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000024
Gbrowse : chr3R:9053961-9084590 (-) // 100.0 //
Probeset : 1624577_at
Accessions : protein= NP_001163600; /// NP_476953;, nucleotide= NM_001170129; /// NM_057605;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005
Interpro : 0003990 // acetylcholinesterase activity // inferred from direct assay /// 0003990 // acetylcholinesterase activity // i
FlyMine data for FBgn0000024.
BDGP gene expression has embryonic in situ data for Ace: 22 pix of staining in 3 body parts.
Homophila reports that CG17907 is a close match (3e-33) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
TRiP has 1 RNAi stocks for FBgn0000024 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000024 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain354 ± 134 of 4 7.00Up
Head287 ± 134 of 4 5.70Up
Eye469 ± 154 of 4 9.29Up
Thoracicoabdominal ganglion761 ± 124 of 415.10Up
Salivary gland16 ± 10 of 4 0.33Down
Crop121 ± 114 of 4 2.40Up
Midgut148 ± 94 of 4 2.90Up
Tubule49 ± 134 of 4 1.00None
Hindgut16 ± 14 of 4 0.30Down
Heart17 ± 24 of 4 0.34Down
Fat body20 ± 84 of 4 0.41Down
Ovary2 ± 01 of 4 0.10Down
Testis12 ± 24 of 4 0.20Down
Male accessory glands32 ± 04 of 4 0.60Down
Virgin spermatheca13 ± 13 of 4 0.27Down
Mated spermatheca17 ± 24 of 4 0.34Down
Adult carcass48 ± 74 of 4 1.00None
Larval CNS309 ± 384 of 4 6.13Up
Larval Salivary gland65 ± 124 of 4 1.29None
Larval midgut94 ± 104 of 4 1.88Up
Larval tubule108 ± 24 of 4 2.10Up
Larval hindgut24 ± 24 of 4 0.48Down
Larval fat body79 ± 144 of 4 1.60None
Larval trachea13 ± 74 of 4 0.27Down
Larval carcass35 ± 34 of 4 0.69Down
S2 cells (growing)3 ± 00 of 4 0.06Down
Whole fly50 ± 34 of 4

Looking for FBgn0000024. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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