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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000028 through 18771 annotations produced 1 hits



chrX:15246389-15272487 (-) // 100.0 // (Abnormal chemosensory jumb):

Annotation Number : CG9151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1631102_a_at
Accessions : protein= , nucleotide= NP_001014743; /// NP_001014744; /// NP_001138198; /// NP_524876; /// NP_727845;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // inferred from mutant phenotype ///
FlyMine data for full length.
Homophila reports that CG9151 is a close match (2e-15) to human gene POU6F2;WT5;WTSL (NP_009183), a gene associated with {Wilms tumor susceptibility-5}, 601583 (3).
BioGrid reports that CG9151 interacts with CG10037 CG10037 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 44 of 412.10Up
Head9 21 of 4 1.30None
Eye4 00 of 4 0.68None
Thoracicoabdominal ganglion21 04 of 4 3.10Up
Salivary gland5 30 of 4 0.80None
Crop2 00 of 4 0.40None
Midgut3 10 of 4 0.60None
Tubule3 10 of 4 0.50Down
Hindgut1 00 of 4 0.30Down
Heart2 10 of 4 0.34None
Fat body6 40 of 4 0.87None
Ovary0 00 of 4 0.10Down
Testis59 24 of 4 8.60Up
Male accessory glands8 20 of 4 1.30None
Virgin spermatheca4 00 of 4 0.62None
Mated spermatheca5 10 of 4 0.75None
Adult carcass3 10 of 4 0.50None
Larval CNS27 44 of 4 3.89Up
Larval Salivary gland4 10 of 4 0.67None
Larval midgut1 10 of 4 0.27Down
Larval tubule2 00 of 4 0.30Down
Larval hindgut1 00 of 4 0.22Down
Larval fat body15 22 of 4 2.20Up
Larval trachea1 20 of 4 0.21Down
Larval carcass2 10 of 4 0.35None
S2 cells (growing)4 10 of 4 0.58None
Whole fly7 10 of 4

Looking for FBgn0000028. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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