FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000036 through 18771 annotations produced 2 hits

Dalpha1 (nAcRalpha-96Aa):

Annotation Number : HDC15395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000036
Gbrowse : chr3R:20277170-20278750 (-) // 96.69 //
Probeset : 1625786_at
Accessions : protein= NP_524481;, nucleotide= NM_079757;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cat
FlyMine data for FBgn0000036.
TRiP has 1 RNAi stocks for FBgn0000036 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000036 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 2	4 of 4	2.40	Up
Head	10 ± 2	4 of 4	1.10	None
Eye	4 ± 1	1 of 4	0.48	None
Thoracicoabdominal ganglion	17 ± 4	3 of 4	1.70	None
Salivary gland	25 ± 4	2 of 4	2.59	Up
Crop	13 ± 0	4 of 4	1.30	None
Midgut	10 ± 2	3 of 4	1.10	None
Tubule	13 ± 0	3 of 4	1.30	Up
Hindgut	12 ± 2	4 of 4	1.30	None
Heart	5 ± 1	2 of 4	0.55	None
Fat body	14 ± 5	4 of 4	1.44	None
Ovary	7 ± 0	4 of 4	0.80	None
Testis	11 ± 0	4 of 4	1.10	None
Male accessory glands	10 ± 1	2 of 4	1.10	None
Virgin spermatheca	12 ± 1	3 of 4	1.23	None
Mated spermatheca	11 ± 0	3 of 4	1.12	None
Adult carcass	19 ± 4	3 of 4	1.90	None
Larval CNS	10 ± 1	4 of 4	1.04	None
Larval Salivary gland	14 ± 3	2 of 4	1.43	None
Larval midgut	13 ± 1	4 of 4	1.34	None
Larval tubule	12 ± 1	4 of 4	1.20	None
Larval hindgut	10 ± 1	4 of 4	1.04	None
Larval fat body	12 ± 1	1 of 4	1.30	None
Larval trachea	6 ± 2	1 of 4	0.61	None
Larval carcass	10 ± 0	4 of 4	1.03	None
S2 cells (growing)	8 ± 1	4 of 4	0.85	None
Whole fly	10 ± 2	3 of 4

Dalpha1 (nAcRalpha-96Aa):

Annotation Number : CG5610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000036
Gbrowse : chr3R:20226947-20282651 (-) // 100.0 //
Probeset : 1632060_at
Accessions : protein= NP_524481;, nucleotide= NM_079757;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cat
FlyMine data for FBgn0000036.
Homophila reports that CG5610 is a close match (1e-12) to human gene GLRA1;STHE (NP_000162), a gene associated with Hyperekplexia and spastic paraparesis (3);Startle disease, autosomal recessive (3);Startle disease/hyperekplexia, autosomal dominant, 149400 (3).
TRiP has 1 RNAi stocks for FBgn0000036 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000036 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	14 ± 1	4 of 4	5.70	Up
Head	2 ± 1	0 of 4	1.10	None
Eye	2 ± 1	0 of 4	0.81	None
Thoracicoabdominal ganglion	12 ± 3	3 of 4	4.70	None
Salivary gland	3 ± 0	0 of 4	1.46	None
Crop	3 ± 0	0 of 4	1.20	None
Midgut	4 ± 1	0 of 4	1.60	None
Tubule	3 ± 0	0 of 4	1.50	None
Hindgut	2 ± 0	0 of 4	0.90	None
Heart	0 ± 0	0 of 4	0.28	None
Fat body	6 ± 2	0 of 4	2.49	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	6 ± 1	3 of 4	2.40	None
Male accessory glands	13 ± 3	3 of 4	5.40	Up
Virgin spermatheca	1 ± 0	0 of 4	0.57	None
Mated spermatheca	2 ± 1	0 of 4	1.08	None
Adult carcass	4 ± 1	0 of 4	1.80	None
Larval CNS	4 ± 1	2 of 4	1.85	None
Larval Salivary gland	5 ± 1	1 of 4	2.14	None
Larval midgut	3 ± 1	0 of 4	1.43	None
Larval tubule	1 ± 0	0 of 4	0.60	None
Larval hindgut	4 ± 1	0 of 4	1.86	None
Larval fat body	3 ± 1	0 of 4	1.20	None
Larval trachea	4 ± 2	1 of 4	1.84	None
Larval carcass	2 ± 1	0 of 4	1.16	None
S2 cells (growing)	2 ± 0	0 of 4	0.83	None
Whole fly	2 ± 1	0 of 4

Looking for FBgn0000036. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720