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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000037 through 18771 annotations produced 1 hits



muscarinic receptor (mAcR-60C):

Annotation Number : CG4356
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000037
Gbrowse : chr2R:20266158-20277235 (-) // 100.0 //
Probeset : 1624833_a_at
Accessions : protein= NP_523844; /// NP_726440;, nucleotide= NM_079120; /// NM_166668;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0005886 // plasma membrane // inferred from electronic
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0000037.
Homophila reports that CG4356 is a close match (7e-11) to human gene ADRB3 (NP_000016), a gene associated with {Obesity, susceptibility to}, 601665 (3).
TRiP has 2 RNAi stocks for FBgn0000037 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000037 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain687 164 of 440.40Up
Head104 54 of 4 6.20Up
Eye45 64 of 4 2.68Up
Thoracicoabdominal ganglion419 104 of 424.70Up
Salivary gland4 20 of 4 0.26Down
Crop2 10 of 4 0.20Down
Midgut3 10 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart2 00 of 4 0.13Down
Fat body4 10 of 4 0.23Down
Ovary1 00 of 4 0.10Down
Testis0 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.16Down
Mated spermatheca4 10 of 4 0.24Down
Adult carcass10 30 of 4 0.60None
Larval CNS228 244 of 413.46Up
Larval Salivary gland1 00 of 4 0.07Down
Larval midgut2 00 of 4 0.12Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.07Down
Larval fat body1 00 of 4 0.10Down
Larval trachea10 92 of 4 0.60None
Larval carcass3 10 of 4 0.20Down
S2 cells (growing)16 04 of 4 1.00None
Whole fly17 14 of 4

Looking for FBgn0000037. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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