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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000039 through 18771 annotations produced 1 hits



Dalpha2 (nAcRalpha-96Ab):

Annotation Number : CG6844
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000039
Gbrowse : chr3R:20311163-20316875 (+) // 100.0 //
Probeset : 1633356_s_at
Accessions : protein= NP_524482; /// NP_733001;, nucleotide= NM_079758; /// NM_170146;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cat
FlyMine data for FBgn0000039.
BDGP gene expression has embryonic in situ data for nAcRalpha-96Ab: 47 pix of staining in 8 body parts.
Homophila reports that CG6844 is a close match (6e-63) to human gene ACHRB;CHRNB1;CMS1D;CMS2A;SCCMS (NP_000738), a gene associated with Myasthenic syndrome, congenital, associated with acetylcholine receptor deficiency, 608931 (3);Myasthenic syndrome, slow-channel congenital, 601462 (3).
BioGrid reports that CG6844 interacts with CG9836 .
TRiP has 1 RNAi stocks for FBgn0000039 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000039 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain493 ± 94 of 422.70Up
Head81 ± 34 of 4 3.70Up
Eye16 ± 14 of 4 0.74Down
Thoracicoabdominal ganglion436 ± 114 of 420.10Up
Salivary gland22 ± 20 of 4 1.05None
Crop13 ± 04 of 4 0.60Down
Midgut14 ± 14 of 4 0.70Down
Tubule9 ± 01 of 4 0.50Down
Hindgut10 ± 12 of 4 0.50Down
Heart6 ± 02 of 4 0.31Down
Fat body16 ± 14 of 4 0.74Down
Ovary6 ± 12 of 4 0.30Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands38 ± 44 of 4 1.80Up
Virgin spermatheca15 ± 24 of 4 0.73None
Mated spermatheca15 ± 13 of 4 0.70Down
Adult carcass24 ± 33 of 4 1.10None
Larval CNS218 ± 84 of 410.04Up
Larval Salivary gland14 ± 12 of 4 0.65Down
Larval midgut16 ± 04 of 4 0.74Down
Larval tubule11 ± 12 of 4 0.50Down
Larval hindgut11 ± 13 of 4 0.51Down
Larval fat body11 ± 12 of 4 0.50Down
Larval trachea6 ± 23 of 4 0.31Down
Larval carcass14 ± 12 of 4 0.66Down
S2 cells (growing)10 ± 04 of 4 0.50Down
Whole fly21 ± 04 of 4

Looking for FBgn0000039. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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