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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000043 through 18771 annotations produced 1 hits



actin (Act42A):

Annotation Number : CG12051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000043
Gbrowse : chr2R:1901414-1903190 (-) // 100.0 //
Probeset : 1624471_s_at
Accessions : protein= NP_523625;, nucleotide= NM_078901;
Pathway : engulfment // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // inferred from sequence or stru
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
FlyMine data for FBgn0000043.
Homophila reports that CG12051 is a close match (0) to human gene ACTC1;CMD1R;CMH11 (NP_005150), a gene associated with Cardiomyopathy, dilated, 1R (3);Cardiomyopathy, familial hypertrophic, 11, 612098 (3).
BioGrid reports that CG12051 interacts with CG5061 CG7285 CG8815 CG4027 .
VDRC has 2 RNAi stocks for FBgn0000043 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain322 134 of 4 0.20Down
Head316 214 of 4 0.20Down
Eye92 104 of 4 0.06Down
Thoracicoabdominal ganglion403 164 of 4 0.30Down
Salivary gland172 184 of 4 0.11Down
Crop134 94 of 4 0.10Down
Midgut3035 1744 of 4 2.00Up
Tubule108 314 of 4 0.10Down
Hindgut658 574 of 4 0.40Down
Heart834 514 of 4 0.54Down
Fat body94 224 of 4 0.06Down
Ovary1450 604 of 4 0.90None
Testis2036 554 of 4 1.30Up
Male accessory glands1015 2974 of 4 0.70None
Virgin spermatheca244 144 of 4 0.16Down
Mated spermatheca406 464 of 4 0.26Down
Adult carcass293 284 of 4 0.20Down
Larval CNS2706 904 of 4 1.76Up
Larval Salivary gland3199 644 of 4 2.08Up
Larval midgut4542 2894 of 4 2.96Up
Larval tubule1196 1604 of 4 0.80None
Larval hindgut2903 974 of 4 1.89Up
Larval fat body1276 1054 of 4 0.80None
Larval trachea2540 2284 of 4 1.65Up
Larval carcass2104 514 of 4 1.37Up
S2 cells (growing)5021 414 of 4 3.27Up
Whole fly1535 1024 of 4

Looking for FBgn0000043. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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