Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000053 through 18771 annotations produced 2 hits



Complementation group D /// (ade3 /// CG31908):

Annotation Number : CG31908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051908
Gbrowse : chr2L:7024828-7027295 (-) // 100.0 //
Probeset : 1623422_a_at
Accessions : protein= NP_723239; /// NP_723240;, nucleotide= NM_164726; /// NM_164727;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004637 // phosphoribosylamine-glycine ligase activity // non-traceable author statement /// 0004637 // phosphoribosylam
FlyMine data for FBgn0051908.
BDGP gene expression has embryonic in situ data for CG31908: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0051908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 24 of 4 0.70Down
Head231 94 of 4 0.80Down
Eye237 94 of 4 0.81Down
Thoracicoabdominal ganglion206 54 of 4 0.70Down
Salivary gland470 34 of 4 1.60Up
Crop376 84 of 4 1.30Up
Midgut274 94 of 4 0.90None
Tubule480 104 of 4 1.60Up
Hindgut307 44 of 4 1.00None
Heart296 104 of 4 1.01None
Fat body283 454 of 4 0.97None
Ovary381 74 of 4 1.30Up
Testis256 44 of 4 0.90Down
Male accessory glands308 254 of 4 1.10None
Virgin spermatheca599 164 of 4 2.04Up
Mated spermatheca578 414 of 4 1.97Up
Adult carcass246 84 of 4 0.80Down
Larval CNS390 154 of 4 1.33Up
Larval Salivary gland355 154 of 4 1.21Up
Larval midgut251 104 of 4 0.86Down
Larval tubule431 54 of 4 1.50Up
Larval hindgut295 124 of 4 1.01None
Larval fat body554 554 of 4 1.90Up
Larval trachea501 304 of 4 1.71Up
Larval carcass344 124 of 4 1.17Up
S2 cells (growing)386 34 of 4 1.32Up
Whole fly293 94 of 4



Complementation group D (ade3):

Annotation Number : CG31628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000053
Gbrowse : chr2L:7014860-7023940 (-) // 100.0 //
Probeset : 1637037_at
Accessions : protein= NP_001014477; /// NP_523497;, nucleotide= NM_001014477; /// NM_078773;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0000053.
VDRC has 2 RNAi stocks for FBgn0000053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 24 of 4 0.20Down
Head294 64 of 4 2.10Up
Eye115 184 of 4 0.83None
Thoracicoabdominal ganglion36 23 of 4 0.30Down
Salivary gland67 53 of 4 0.49Down
Crop100 14 of 4 0.70Down
Midgut30 23 of 4 0.20Down
Tubule55 33 of 4 0.40Down
Hindgut93 34 of 4 0.70Down
Heart174 114 of 4 1.25Up
Fat body386 564 of 4 2.77Up
Ovary123 14 of 4 0.90None
Testis16 13 of 4 0.10Down
Male accessory glands10 40 of 4 0.10Down
Virgin spermatheca1430 1064 of 410.24Up
Mated spermatheca539 714 of 4 3.86Up
Adult carcass301 114 of 4 2.20Up
Larval CNS140 174 of 4 1.01None
Larval Salivary gland106 124 of 4 0.76None
Larval midgut47 64 of 4 0.34Down
Larval tubule114 94 of 4 0.80None
Larval hindgut53 24 of 4 0.38Down
Larval fat body3859 3454 of 427.60Up
Larval trachea79 44 of 4 0.57Down
Larval carcass67 74 of 4 0.48Down
S2 cells (growing)148 84 of 4 1.06None
Whole fly139 64 of 4

Looking for FBgn0000053. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime