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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000055 through 18771 annotations produced 2 hits



alcohol dehydrogenase /// Adh-related (Adh /// Adhr):

Annotation Number : CG32954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000055 /// FBgn0000056
Gbrowse : chr2L:14615554-14617419 (+) // 100.0 //
Probeset : 1631333_s_at
Accessions : protein= NP_001027266; /// NP_001027267; /// NP_001027268; /// NP_001027269; /// NP_001027270; /// NP_001027272; /// NP_477495;, nucleotide= NM_001032095; /// NM_001032096; /// NM_001032097; /// NM_001032098; /// NM_001032099; /// NM_001032101; /// NM_058147;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005875
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity
FlyMine data for FBgn0000055 /// FBgn0000056.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3652 ± 1004 of 4 0.80None
Head5346 ± 2104 of 4 1.20Up
Eye8006 ± 1864 of 4 1.83Up
Thoracicoabdominal ganglion5062 ± 1814 of 4 1.20None
Salivary gland12209 ± 3574 of 4 2.79Up
Crop7390 ± 4804 of 4 1.70Up
Midgut2066 ± 1004 of 4 0.50Down
Tubule7151 ± 1864 of 4 1.60Up
Hindgut5017 ± 994 of 4 1.10None
Heart7542 ± 6374 of 4 1.72Up
Fat body5467 ± 8194 of 4 1.25None
Ovary1838 ± 124 of 4 0.40Down
Testis120 ± 54 of 4 0.00Down
Male accessory glands707 ± 264 of 4 0.20Down
Virgin spermatheca5079 ± 2034 of 4 1.16None
Mated spermatheca5452 ± 3254 of 4 1.25None
Adult carcass7291 ± 4544 of 4 1.70Up
Larval CNS71 ± 294 of 4 0.02Down
Larval Salivary gland275 ± 204 of 4 0.06Down
Larval midgut4357 ± 1014 of 4 1.00None
Larval tubule4598 ± 2024 of 4 1.10None
Larval hindgut1602 ± 924 of 4 0.37Down
Larval fat body8659 ± 8934 of 4 2.00Up
Larval trachea745 ± 6094 of 4 0.17Down
Larval carcass1311 ± 1074 of 4 0.30Down
S2 cells (growing)4 ± 00 of 4 0.00Down
Whole fly4378 ± 2954 of 4



alcohol dehydrogenase /// Adh-related (Adh /// Adhr):

Annotation Number : CG32954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000055 /// FBgn0000056
Gbrowse : chr2L:14615554-14618902 (+) // 100.0 //
Probeset : 1632699_s_at
Accessions : protein= NP_001027266; /// NP_001027267; /// NP_001027268; /// NP_001027269; /// NP_001027270; /// NP_001027272; /// NP_477495;, nucleotide= NM_001032095; /// NM_001032096; /// NM_001032097; /// NM_001032098; /// NM_001032099; /// NM_001032101; /// NM_058147;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 0005875
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004022 // alcohol dehydrogenase (NAD) activity
FlyMine data for FBgn0000055 /// FBgn0000056.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 34 of 4 2.50Up
Head75 ± 44 of 4 2.00Up
Eye43 ± 14 of 4 1.16None
Thoracicoabdominal ganglion105 ± 84 of 4 2.80Up
Salivary gland47 ± 24 of 4 1.27None
Crop96 ± 34 of 4 2.60Up
Midgut9 ± 03 of 4 0.30Down
Tubule95 ± 84 of 4 2.60Up
Hindgut40 ± 44 of 4 1.10None
Heart92 ± 74 of 4 2.50Up
Fat body152 ± 34 of 4 4.11Up
Ovary6 ± 04 of 4 0.20Down
Testis5 ± 04 of 4 0.10Down
Male accessory glands14 ± 14 of 4 0.40Down
Virgin spermatheca189 ± 274 of 4 5.11Up
Mated spermatheca121 ± 124 of 4 3.26Up
Adult carcass89 ± 34 of 4 2.40Up
Larval CNS4 ± 22 of 4 0.13Down
Larval Salivary gland5 ± 11 of 4 0.15Down
Larval midgut124 ± 84 of 4 3.34Up
Larval tubule12 ± 14 of 4 0.30Down
Larval hindgut7 ± 04 of 4 0.21Down
Larval fat body40 ± 64 of 4 1.10None
Larval trachea6 ± 22 of 4 0.18Down
Larval carcass19 ± 14 of 4 0.53Down
S2 cells (growing)4 ± 01 of 4 0.11Down
Whole fly37 ± 44 of 4

Looking for FBgn0000055. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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