Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000061 through 18771 annotations produced 1 hits



chr2L:378115-387439 (+) // 100.0 // (aristaless):

Annotation Number : CG3935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1639333_at
Accessions : protein= , nucleotide= NP_722629;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG3935 is a close match (4e-11) to human gene HESX1;RPX (NP_003856), a gene associated with Pituitary hormone deficiency, combined, HESX1-related, 182230 (3);Septooptic dysplasia, 182230 (3).
BioGrid reports that CG3935 interacts with CG6660 CG8871 CG11354 CG11354 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.50Down
Head9 30 of 4 1.20None
Eye6 10 of 4 0.77None
Thoracicoabdominal ganglion7 10 of 4 0.90None
Salivary gland23 50 of 4 2.90None
Crop3 00 of 4 0.40Down
Midgut2 00 of 4 0.40Down
Tubule6 00 of 4 0.80Down
Hindgut23 10 of 4 2.90Up
Heart1 00 of 4 0.21Down
Fat body11 40 of 4 1.48None
Ovary3 10 of 4 0.40Down
Testis3 00 of 4 0.50Down
Male accessory glands16 10 of 4 2.10Up
Virgin spermatheca4 00 of 4 0.58None
Mated spermatheca11 20 of 4 1.47None
Adult carcass19 30 of 4 2.40Up
Larval CNS13 30 of 4 1.68Up
Larval Salivary gland6 20 of 4 0.79None
Larval midgut103 70 of 412.95Up
Larval tubule3 10 of 4 0.50Down
Larval hindgut9 10 of 4 1.24None
Larval fat body20 60 of 4 2.50None
Larval trachea8 30 of 4 1.12None
Larval carcass48 50 of 4 6.05Up
S2 cells (growing)16 40 of 4 2.11None
Whole fly8 10 of 4

Looking for FBgn0000061. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime