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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000063 through 18771 annotations produced 1 hits



monopolar spindles 1 (ald):

Annotation Number : CG7643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000063
Gbrowse : chr3R:13497019-13499550 (+) // 100.0 //
Probeset : 1637781_at
Accessions : protein= NP_650644;, nucleotide= NM_142387;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0000063.
Homophila reports that CG7643 is a close match (4e-11) to human gene DM;DMK;DMPK (NP_001075031), a gene associated with Myotonic dystrophy, 160900 (3).
BioGrid reports that CG7643 interacts with CG10078 CG5825 CG11182 CG17515 CG11138 CG13806 CG18745 CG31811 CG16892 CG31646 CG32169 CG13510 CG13625 CG9046 CG31211 CG5442 CG31204 CG5708 CG6191 CG6987 CG2944 CG5473 CG31000 CG7948 CG5731 CG15218 CG12723 CG4602 CG8929 CG2189 CG8841 CG6369 CG9776 CG33109 CG11352 CG9889 CG5386 CG15112 CG14816 CG8541 .
TRiP has 2 RNAi stocks for FBgn0000063 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 04 of 4 0.30Down
Head5 10 of 4 0.10Down
Eye4 00 of 4 0.11Down
Thoracicoabdominal ganglion11 12 of 4 0.30Down
Salivary gland1 00 of 4 0.04Down
Crop2 00 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut3 10 of 4 0.10Down
Heart3 10 of 4 0.08Down
Fat body3 20 of 4 0.09Down
Ovary112 24 of 4 2.90Up
Testis45 34 of 4 1.20None
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca4 00 of 4 0.10Down
Mated spermatheca3 00 of 4 0.08Down
Adult carcass6 00 of 4 0.20Down
Larval CNS51 24 of 4 1.32Up
Larval Salivary gland3 10 of 4 0.09Down
Larval midgut1 00 of 4 0.05Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.09Down
Larval fat body10 31 of 4 0.30Down
Larval trachea12 33 of 4 0.31Down
Larval carcass6 10 of 4 0.16Down
S2 cells (growing)59 14 of 4 1.52Up
Whole fly39 24 of 4

Looking for FBgn0000063. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime