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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000075 through 18771 annotations produced 1 hits



dopa decarboxylase (amd):

Annotation Number : CG10501
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000075
Gbrowse : chr2L:19110158-19114110 (+) // 100.0 //
Probeset : 1631281_a_at
Accessions : protein= NP_476592; /// NP_724162;, nucleotide= NM_057244; /// NM_165278;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004058 // aromatic-L-amino-acid decarboxylase
FlyMine data for FBgn0000075.
Homophila reports that CG10501 is a close match (7e-26) to human gene GAD1;SCP (NP_000808), a gene associated with Cerebral palsy, spastic, symmetric, autosomal recessive, 603513 (3).
VDRC has 3 RNAi stocks for FBgn0000075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10None
Head27 ± 53 of 4 1.10None
Eye2 ± 00 of 4 0.11None
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.12None
Crop34 ± 24 of 4 1.40None
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut27 ± 01 of 4 1.10None
Heart1 ± 10 of 4 0.07Down
Fat body0 ± 00 of 4 0.02Down
Ovary30 ± 23 of 4 1.20None
Testis2 ± 00 of 4 0.10None
Male accessory glands2 ± 00 of 4 0.10None
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca0 ± 00 of 4 0.03Down
Adult carcass3 ± 10 of 4 0.10None
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland0 ± 00 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.10None
Larval hindgut51 ± 24 of 4 2.09Up
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea13 ± 42 of 4 0.55None
Larval carcass15 ± 61 of 4 0.65None
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly24 ± 74 of 4

Looking for FBgn0000075. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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