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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000076 through 18771 annotations produced 1 hits



amnesiac (amn):

Annotation Number : CG11937
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086782
Gbrowse : chrX:19780140-19784093 (-) // 100.0 //
Probeset : 1625930_at
Accessions : protein= NP_523416;, nucleotide= NM_078692;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0001664 // G-protein-coupled receptor binding // non-traceable author statement /// 0005184 // neuropeptide hormone acti
FlyMine data for FBgn0086782.
BioGrid reports that CG11937 interacts with CG32498 CG3978 CG9533 .
TRiP has 1 RNAi stocks for FBgn0086782 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086782 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 10 of 4 0.70None
Head1 00 of 4 0.50None
Eye1 00 of 4 0.79None
Thoracicoabdominal ganglion3 10 of 4 1.60None
Salivary gland5 10 of 4 2.14None
Crop3 00 of 4 1.60None
Midgut0 00 of 4 0.20None
Tubule2 00 of 4 1.20None
Hindgut1 00 of 4 0.60None
Heart0 00 of 4 0.35None
Fat body2 20 of 4 1.06None
Ovary0 00 of 4 0.40None
Testis1 00 of 4 0.40None
Male accessory glands1 00 of 4 0.70None
Virgin spermatheca2 00 of 4 1.17None
Mated spermatheca2 10 of 4 1.23None
Adult carcass2 10 of 4 1.10None
Larval CNS1 10 of 4 0.74None
Larval Salivary gland2 00 of 4 0.93None
Larval midgut2 00 of 4 1.09None
Larval tubule3 10 of 4 1.30None
Larval hindgut2 00 of 4 1.19None
Larval fat body4 20 of 4 2.00None
Larval trachea0 00 of 4 0.29None
Larval carcass1 00 of 4 0.73None
S2 cells (growing)11 14 of 4 5.04Up
Whole fly2 10 of 4

Looking for FBgn0000076. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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