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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000077 through 18771 annotations produced 1 hits



almondex (amx):

Annotation Number : CG12127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000077
Gbrowse : chrX:9139943-9141369 (-) // 100.0 //
Probeset : 1629036_at
Accessions : protein= NP_524644;, nucleotide= NM_079905;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
FlyMine data for FBgn0000077.
VDRC has 2 RNAi stocks for FBgn0000077 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 74 of 4 1.30None
Head83 34 of 4 1.10None
Eye40 14 of 4 0.54Down
Thoracicoabdominal ganglion90 64 of 4 1.20None
Salivary gland88 54 of 4 1.16None
Crop72 34 of 4 1.00None
Midgut78 24 of 4 1.00None
Tubule87 34 of 4 1.10Up
Hindgut65 54 of 4 0.90None
Heart68 14 of 4 0.90Down
Fat body80 94 of 4 1.06None
Ovary142 14 of 4 1.90Up
Testis8 01 of 4 0.10Down
Male accessory glands90 34 of 4 1.20Up
Virgin spermatheca96 44 of 4 1.27Up
Mated spermatheca104 44 of 4 1.38Up
Adult carcass72 24 of 4 1.00None
Larval CNS45 44 of 4 0.59Down
Larval Salivary gland57 14 of 4 0.76Down
Larval midgut70 14 of 4 0.93None
Larval tubule95 34 of 4 1.30Up
Larval hindgut58 14 of 4 0.78Down
Larval fat body77 104 of 4 1.00None
Larval trachea49 74 of 4 0.65Down
Larval carcass40 14 of 4 0.54Down
S2 cells (growing)91 44 of 4 1.20Up
Whole fly75 14 of 4

Looking for FBgn0000077. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime