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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000092 through 18771 annotations produced 1 hits



0.9kb transcript (CG2650):

Annotation Number : CG2650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000092
Gbrowse : chrX:2586763-2587919 (-) // 100.0 //
Probeset : 1638856_at
Accessions : protein= NP_570016;, nucleotide= NM_130660;
FlyMine data for FBgn0000092.
BDGP gene expression has embryonic in situ data for CG2650: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0000092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 20 of 4 0.70None
Head43 ± 34 of 4 5.50Up
Eye57 ± 184 of 4 7.31None
Thoracicoabdominal ganglion13 ± 10 of 4 1.70Up
Salivary gland8 ± 40 of 4 1.11None
Crop24 ± 51 of 4 3.10Up
Midgut4 ± 10 of 4 0.60None
Tubule11 ± 00 of 4 1.40Up
Hindgut128 ± 104 of 416.30Up
Heart3 ± 10 of 4 0.48None
Fat body1 ± 00 of 4 0.17Down
Ovary2 ± 00 of 4 0.30Down
Testis3 ± 00 of 4 0.50None
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca4 ± 10 of 4 0.58None
Mated spermatheca5 ± 10 of 4 0.69None
Adult carcass10 ± 40 of 4 1.30None
Larval CNS7 ± 20 of 4 0.94None
Larval Salivary gland2 ± 10 of 4 0.30Down
Larval midgut5 ± 20 of 4 0.64None
Larval tubule4 ± 10 of 4 0.50None
Larval hindgut1 ± 00 of 4 0.13Down
Larval fat body2 ± 10 of 4 0.30Down
Larval trachea63 ± 364 of 4 8.05None
Larval carcass5 ± 10 of 4 0.65None
S2 cells (growing)7 ± 20 of 4 0.93None
Whole fly7 ± 10 of 4

Looking for FBgn0000092. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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