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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000097 through 18771 annotations produced 1 hits

pokkuri (aop):

Annotation Number : CG3166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000097
Gbrowse : chr2L:2156483-2178749 (-) // 100.0 //
Probeset : 1627394_s_at
Accessions : protein= NP_523455; /// NP_722766;, nucleotide= NM_078731; /// NM_164457;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006897 // endocytosis // inferred from mutant phenotype /// 0
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0000097.
BDGP gene expression has embryonic in situ data for aop: 7 pix of staining in 5 body parts.
Homophila reports that CG3166 is a close match (4e-19) to human gene ETV6;TEL (NP_001978), a gene associated with Leukemia, acute myeloid, somatic, 601626 (3).
BioGrid reports that CG3166 interacts with CG3335 CG8159 CG5529 CG15793 CG10079 CG10079 CG6721 CG5460 CG5460 CG2275 CG3936 CG3936 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG4385 CG8815 CG3497 CG5444 CG5680 CG5461 CG12676 CG9554 CG1945 CG7672 CG2899 CG8817 CG8817 CG1689 CG1689 CG2845 CG2845 CG17077 CG17077 CG17077 CG17077 CG17228 CG12437 CG5403 CG1004 CG12559 CG12559 CG18497 CG1395 CG1921 CG11502 CG1856 CG1856 CG32217 CG15085 CG15085 CG15085 .
TRiP has 3 RNAi stocks for FBgn0000097 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain176 34 of 4 1.10None
Head183 94 of 4 1.10None
Eye134 74 of 4 0.84None
Thoracicoabdominal ganglion164 24 of 4 1.00None
Salivary gland147 114 of 4 0.92None
Crop341 124 of 4 2.10Up
Midgut327 154 of 4 2.00Up
Tubule185 144 of 4 1.20None
Hindgut187 94 of 4 1.20None
Heart115 44 of 4 0.72Down
Fat body190 324 of 4 1.18None
Ovary364 44 of 4 2.30Up
Testis30 24 of 4 0.20Down
Male accessory glands183 134 of 4 1.10None
Virgin spermatheca238 124 of 4 1.48Up
Mated spermatheca274 64 of 4 1.70Up
Adult carcass146 94 of 4 0.90None
Larval CNS269 144 of 4 1.68Up
Larval Salivary gland16 14 of 4 0.10Down
Larval midgut184 54 of 4 1.15None
Larval tubule172 94 of 4 1.10None
Larval hindgut142 54 of 4 0.89None
Larval fat body225 344 of 4 1.40None
Larval trachea200 154 of 4 1.25Up
Larval carcass182 424 of 4 1.14None
S2 cells (growing)736 304 of 4 4.58Up
Whole fly160 124 of 4

Looking for FBgn0000097. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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