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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000099 through 18771 annotations produced 2 hits



chr2R:1594721-1614335 (-) // 100.0 // (apterous):

Annotation Number : CG8376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1639498_a_at
Accessions : protein= , nucleotide= NP_001163058; /// NP_001163059; /// NP_523621; /// NP_724428;
Pathway : "0006350 // transcription // inferred from mutant phenotype /// 0006350 // transcription // traceable author statement /
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG8376 is a close match (9e-11) to human gene ARMD6;CORD11;QRX;RAXL1 (NP_116142), a gene associated with Cone-rod dystrophy 11, 610381 (3);Macular degeneration, age-related, 6 (3).
BioGrid reports that CG8376 interacts with CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3619 CG1897 CG5460 CG10699 CG6127 CG6127 CG6127 CG3578 CG11282 CG10580 CG10580 CG10580 CG10580 CG10580 CG10580 CG10580 CG16785 CG1771 CG7847 CG10619 CG3830 CG10491 CG4889 CG4889 CG4889 CG4889 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 24 of 4 2.70Up
Head108 ± 154 of 4 3.30Up
Eye22 ± 34 of 4 0.69None
Thoracicoabdominal ganglion13 ± 24 of 4 0.40Down
Salivary gland25 ± 52 of 4 0.77None
Crop10 ± 12 of 4 0.30Down
Midgut6 ± 22 of 4 0.20Down
Tubule33 ± 84 of 4 1.00None
Hindgut8 ± 12 of 4 0.30Down
Heart55 ± 34 of 4 1.68Up
Fat body263 ± 254 of 4 8.07Up
Ovary2 ± 00 of 4 0.10Down
Testis127 ± 84 of 4 3.90Up
Male accessory glands10 ± 11 of 4 0.30Down
Virgin spermatheca108 ± 124 of 4 3.31Up
Mated spermatheca123 ± 54 of 4 3.76Up
Adult carcass106 ± 134 of 4 3.30Up
Larval CNS74 ± 84 of 4 2.29Up
Larval Salivary gland8 ± 01 of 4 0.25Down
Larval midgut5 ± 10 of 4 0.18Down
Larval tubule4 ± 01 of 4 0.20Down
Larval hindgut11 ± 14 of 4 0.36Down
Larval fat body158 ± 94 of 4 4.80Up
Larval trachea7 ± 10 of 4 0.23Down
Larval carcass18 ± 34 of 4 0.56Down
S2 cells (growing)2358 ± 244 of 472.14Up
Whole fly32 ± 24 of 4



chr2R:1593706-1614335 (-) // 100.0 // (apterous):

Annotation Number : CG8376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624412_at
Accessions : protein= , nucleotide= NP_001163058; /// NP_001163059; /// NP_523621; /// NP_724428;
Pathway : "0006350 // transcription // inferred from mutant phenotype /// 0006350 // transcription // traceable author statement /
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG8376 is a close match (9e-11) to human gene ARMD6;CORD11;QRX;RAXL1 (NP_116142), a gene associated with Cone-rod dystrophy 11, 610381 (3);Macular degeneration, age-related, 6 (3).
BioGrid reports that CG8376 interacts with CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3924 CG3619 CG1897 CG5460 CG10699 CG6127 CG6127 CG6127 CG3578 CG11282 CG10580 CG10580 CG10580 CG10580 CG10580 CG10580 CG10580 CG16785 CG1771 CG7847 CG10619 CG3830 CG10491 CG4889 CG4889 CG4889 CG4889 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 ± 74 of 4 5.50Up
Head149 ± 84 of 4 4.10Up
Eye30 ± 34 of 4 0.83None
Thoracicoabdominal ganglion21 ± 14 of 4 0.60Down
Salivary gland6 ± 30 of 4 0.18Down
Crop4 ± 00 of 4 0.10Down
Midgut5 ± 12 of 4 0.20Down
Tubule10 ± 13 of 4 0.30Down
Hindgut6 ± 12 of 4 0.20Down
Heart61 ± 44 of 4 1.67Up
Fat body347 ± 394 of 4 9.48Up
Ovary2 ± 00 of 4 0.10Down
Testis6 ± 03 of 4 0.20Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca148 ± 124 of 4 4.05Up
Mated spermatheca173 ± 174 of 4 4.74Up
Adult carcass102 ± 64 of 4 2.80Up
Larval CNS267 ± 624 of 4 7.30Up
Larval Salivary gland5 ± 00 of 4 0.16Down
Larval midgut6 ± 02 of 4 0.17Down
Larval tubule4 ± 02 of 4 0.10Down
Larval hindgut13 ± 04 of 4 0.36Down
Larval fat body167 ± 164 of 4 4.60Up
Larval trachea5 ± 23 of 4 0.14Down
Larval carcass30 ± 24 of 4 0.84None
S2 cells (growing)2162 ± 274 of 459.03Up
Whole fly36 ± 24 of 4

Looking for FBgn0000099. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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