FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0000117 through 18771 annotations produced 1 hits

Armadillo (arm):

Annotation Number : CG11579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000117
Gbrowse : chrX:1785433-1794673 (-) // 100.0 //
Probeset : 1629020_s_at
Accessions : protein= NP_476665; /// NP_476666; /// NP_599100; /// NP_726775; /// NP_996328;, nucleotide= NM_057317; /// NM_057318; /// NM_134273; /// NM_166912; /// NM_206605;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035153 // epithelial cell type specification
Interpro : open tracheal system // inferred from mutant phenotype /// 0045186 // zonula adherens assembly // inferred from mutant
FlyMine data for FBgn0000117.
BDGP gene expression has embryonic in situ data for arm: 4 pix of staining in 1 body parts.
Homophila reports that CG11579 is a close match (0) to human gene ARVD12;DP3;JUP;PDGB (NP_068831), a gene associated with Arrhythmogenic right ventricular dysplasia, familial, 12, 611528 (3);Naxos disease, 601214 (3).
BioGrid reports that CG11579 interacts with CG17964 CG3402 CG9541 CG14667 CG16719 CG17268 CG17319 CG4771 CG6193 CG6899 CG7196 CG4032 CG4032 CG1451 CG7926 CG5940 CG10079 CG10079 CG10079 CG5803 CG18803 CG18492 CG18492 CG5123 CG1916 CG4531 CG4531 CG4531 CG4531 CG4531 CG4531 CG5942 CG5680 CG5680 CG5363 CG2125 CG2125 CG2125 CG2125 CG6383 CG5102 CG4974 CG1725 CG32146 CG9885 CG9885 CG17941 CG18361 CG18361 CG3352 CG17697 CG17697 CG17697 CG17697 CG9739 CG8384 CG4353 CG4353 CG2041 CG8817 CG8118 CG8118 CG18740 CG15319 CG11614 CG11614 CG11614 CG6824 CG17484 CG17964 CG17964 CG17964 CG17964 CG17964 CG4003 CG1857 CG1857 CG1857 CG1857 CG11518 CG9750 CG1004 CG6464 CG32717 CG2621 CG2621 CG2621 CG2621 CG2621 CG2621 CG2621 CG2621 CG3722 CG3722 CG3722 CG3722 CG3722 CG3722 CG3722 CG3722 CG10334 CG1395 CG1395 CG14026 CG14026 CG14026 CG14026 CG1374 CG1374 CG1374 CG1374 CG1374 CG1374 CG1374 CG1374 CG6235 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG7850 CG7850 CG7850 CG7850 CG6193 CG6193 CG6193 CG7957 CG3722 CG2041 .
TRiP has 3 RNAi stocks for FBgn0000117 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000117 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1619 ± 21	4 of 4	2.10	Up
Head	1001 ± 28	4 of 4	1.30	Up
Eye	1372 ± 49	4 of 4	1.81	Up
Thoracicoabdominal ganglion	1297 ± 40	4 of 4	1.70	Up
Salivary gland	1858 ± 60	4 of 4	2.45	Up
Crop	1023 ± 19	4 of 4	1.40	Up
Midgut	771 ± 22	4 of 4	1.00	None
Tubule	813 ± 18	4 of 4	1.10	Up
Hindgut	802 ± 16	4 of 4	1.10	None
Heart	551 ± 27	4 of 4	0.73	Down
Fat body	398 ± 47	4 of 4	0.53	Down
Ovary	988 ± 6	4 of 4	1.30	Up
Testis	217 ± 8	4 of 4	0.30	Down
Male accessory glands	811 ± 25	4 of 4	1.10	None
Virgin spermatheca	369 ± 15	4 of 4	0.49	Down
Mated spermatheca	414 ± 21	4 of 4	0.55	Down
Adult carcass	561 ± 24	4 of 4	0.70	Down
Larval CNS	1559 ± 31	4 of 4	2.06	Up
Larval Salivary gland	1544 ± 43	4 of 4	2.04	Up
Larval midgut	1046 ± 20	4 of 4	1.38	Up
Larval tubule	1168 ± 12	4 of 4	1.50	Up
Larval hindgut	997 ± 22	4 of 4	1.32	Up
Larval fat body	590 ± 34	4 of 4	0.80	Down
Larval trachea	1310 ± 46	4 of 4	1.73	Up
Larval carcass	823 ± 46	4 of 4	1.09	None
S2 cells (growing)	1819 ± 63	4 of 4	2.40	Up
Whole fly	757 ± 50	4 of 4

Looking for FBgn0000117. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720