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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000119 through 18771 annotations produced 1 hits



LDLR-like (arr):

Annotation Number : CG5912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000119
Gbrowse : chr2R:9341137-9370723 (-) // 100.0 //
Probeset : 1634211_at
Accessions : protein= NP_524737;, nucleotide= NM_079998;
Pathway : 0005769 // early endosome // inferred from direct assay /// 0005770 // late endosome // inferred from direct assay /// 0
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0017147 // W
FlyMine data for FBgn0000119.
BDGP gene expression has embryonic in situ data for arr: 12 pix of staining in 8 body parts.
Homophila reports that CG5912 is a close match (2e-12) to human gene IRIDA;TMPRSS6 (NP_705837), a gene associated with Iron-refractory iron deficiency anemia, 206200 (3).
BioGrid reports that CG5912 interacts with CG6934 CG8851 CG18361 CG4889 .
TRiP has 2 RNAi stocks for FBgn0000119 available for purchase.
VDRC has 5 RNAi stocks for FBgn0000119 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 24 of 4 1.90Up
Head90 64 of 4 1.50Up
Eye85 14 of 4 1.46Up
Thoracicoabdominal ganglion78 44 of 4 1.30None
Salivary gland291 74 of 4 4.96Up
Crop121 94 of 4 2.10Up
Midgut79 44 of 4 1.40None
Tubule85 84 of 4 1.40Up
Hindgut75 24 of 4 1.30None
Heart66 14 of 4 1.13None
Fat body104 64 of 4 1.78Up
Ovary207 94 of 4 3.50Up
Testis30 24 of 4 0.50Down
Male accessory glands64 44 of 4 1.10None
Virgin spermatheca161 164 of 4 2.75Up
Mated spermatheca158 84 of 4 2.70Up
Adult carcass38 14 of 4 0.70None
Larval CNS260 334 of 4 4.44Up
Larval Salivary gland297 234 of 4 5.06Up
Larval midgut69 64 of 4 1.18None
Larval tubule140 134 of 4 2.40Up
Larval hindgut125 64 of 4 2.14Up
Larval fat body104 64 of 4 1.80Up
Larval trachea206 204 of 4 3.51Up
Larval carcass171 124 of 4 2.91Up
S2 cells (growing)71 24 of 4 1.21None
Whole fly58 84 of 4

Looking for FBgn0000119. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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