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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000121 through 18771 annotations produced 1 hits



arrestin (Arr2):

Annotation Number : CG5962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000121
Gbrowse : chr3L:8640366-8642036 (-) // 100.0 //
Probeset : 1632111_at
Accessions : protein= NP_523976;, nucleotide= NM_079252;
Pathway : 0005624 // membrane fraction // inferred from direct assay /// 0005625 // soluble fraction // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016030 // metarhodopsin binding // traceable autho
FlyMine data for FBgn0000121.
Homophila reports that CG5962 is a close match (2e-54) to human gene SAG (NP_000532), a gene associated with Oguchi disease-1, 258100 (3).
BioGrid reports that CG5962 interacts with CG5711 CG5711 CG17759 CG17759 CG3620 CG11111 CG6571 CG6571 .
TRiP has 4 RNAi stocks for FBgn0000121 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1866 ± 1164 of 4 0.80Down
Head6043 ± 2204 of 4 2.70Up
Eye11107 ± 1804 of 4 4.88Up
Thoracicoabdominal ganglion8 ± 10 of 4 0.00Down
Salivary gland11 ± 20 of 4 0.01Down
Crop14 ± 20 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule9 ± 10 of 4 0.00Down
Hindgut8 ± 00 of 4 0.00Down
Heart74 ± 454 of 4 0.03Down
Fat body4 ± 10 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands11 ± 40 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.00Down
Mated spermatheca6 ± 10 of 4 0.00Down
Adult carcass4 ± 10 of 4 0.00Down
Larval CNS4 ± 30 of 4 0.00Down
Larval Salivary gland4 ± 00 of 4 0.00Down
Larval midgut17 ± 40 of 4 0.01Down
Larval tubule4 ± 00 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.00Down
Larval fat body8 ± 20 of 4 0.00Down
Larval trachea1378 ± 26623 of 4 0.61None
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)6 ± 20 of 4 0.00Down
Whole fly2278 ± 1174 of 4

Looking for FBgn0000121. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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