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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000140 through 18771 annotations produced 1 hits



abnormal spindle (asp):

Annotation Number : CG6875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000140
Gbrowse : chr3R:20579624-20586235 (+) // 100.0 //
Probeset : 1627383_at
Accessions : protein= NP_524488;, nucleotide= NM_079764;
Pathway : 0000922 // spindle pole // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation ///
Interpro : 0004672 // protein kinase activity // inferred from direct assay /// 0005516 // calmodulin binding // inferred from elec
FlyMine data for FBgn0000140.
BDGP gene expression has embryonic in situ data for asp: 17 pix of staining in 11 body parts.
Homophila reports that CG6875 is a close match (3e-56) to human gene ASPM;MCPH5 (NP_060606), a gene associated with Microcephaly, primary autosomal recessive, 5, with or without simplified gyral pattern, 608716 (3).
BioGrid reports that CG6875 interacts with CG8472 CG9188 CG15793 CG12559 CG12559 .
TRiP has 2 RNAi stocks for FBgn0000140 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 02 of 4 0.10Down
Head7 30 of 4 0.00Down
Eye5 10 of 4 0.03Down
Thoracicoabdominal ganglion15 31 of 4 0.10Down
Salivary gland28 60 of 4 0.15Down
Crop14 21 of 4 0.10Down
Midgut16 11 of 4 0.10Down
Tubule13 41 of 4 0.10Down
Hindgut7 20 of 4 0.00Down
Heart6 00 of 4 0.03Down
Fat body17 40 of 4 0.09Down
Ovary452 84 of 4 2.50Up
Testis146 34 of 4 0.80None
Male accessory glands11 30 of 4 0.10Down
Virgin spermatheca16 21 of 4 0.09Down
Mated spermatheca10 31 of 4 0.06Down
Adult carcass26 14 of 4 0.10Down
Larval CNS230 124 of 4 1.25None
Larval Salivary gland13 10 of 4 0.07Down
Larval midgut24 24 of 4 0.13Down
Larval tubule11 10 of 4 0.10Down
Larval hindgut25 04 of 4 0.14Down
Larval fat body45 103 of 4 0.20Down
Larval trachea71 34 of 4 0.39Down
Larval carcass45 52 of 4 0.25Down
S2 cells (growing)164 64 of 4 0.89None
Whole fly183 164 of 4

Looking for FBgn0000140. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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