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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0000153 through 18771 annotations produced 1 hits

black (b):

Annotation Number : CG7811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000153
Gbrowse : chr2L:13821202-13823894 (+) // 100.0 //
Probeset : 1640736_at
Accessions : protein= NP_476788;, nucleotide= NM_057440;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004068 // aspartate 1-decarboxylase activity /
FlyMine data for FBgn0000153.
Homophila reports that CG7811 is a close match (1e-11) to human gene GAD1;SCP (NP_038473), a gene associated with Cerebral palsy, spastic, symmetric, autosomal recessive, 603513 (3).
BioGrid reports that CG7811 interacts with CG18572 CG18572 .
TRiP has 1 RNAi stocks for FBgn0000153 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000153 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 74 of 4 0.60Down
Head708 534 of 4 5.20Up
Eye1839 1264 of 413.57Up
Thoracicoabdominal ganglion16 14 of 4 0.10Down
Salivary gland25 01 of 4 0.19Down
Crop63 34 of 4 0.50Down
Midgut9 31 of 4 0.10Down
Tubule9 01 of 4 0.10Down
Hindgut22 34 of 4 0.20Down
Heart16 22 of 4 0.12Down
Fat body21 43 of 4 0.16Down
Ovary4 11 of 4 0.00Down
Testis7 03 of 4 0.10Down
Male accessory glands22 33 of 4 0.20Down
Virgin spermatheca15 14 of 4 0.11Down
Mated spermatheca22 24 of 4 0.17Down
Adult carcass689 664 of 4 5.10Up
Larval CNS8 04 of 4 0.06Down
Larval Salivary gland14 22 of 4 0.11Down
Larval midgut8 30 of 4 0.06Down
Larval tubule8 02 of 4 0.10Down
Larval hindgut25 44 of 4 0.19Down
Larval fat body11 41 of 4 0.10Down
Larval trachea92 414 of 4 0.69None
Larval carcass797 4204 of 4 5.88None
S2 cells (growing)8 02 of 4 0.06Down
Whole fly135 114 of 4

Looking for FBgn0000153. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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