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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0000157 through 18771 annotations produced 3 hits



chr2R:20702352-20722125 (+) // 100.0 // (Distal-less):

Annotation Number : CG3629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630237_a_at
Accessions : protein= , nucleotide= NP_001137759; /// NP_523857; /// NP_726486;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG3629 is a close match (7e-11) to human gene IDG2;IGDS2;PITX2;RGS;RIEG1 (NP_700476), a gene associated with Iridogoniodysgenesis syndrome-2, 137600 (3);Rieger syndrome, 180500 (3);Ring dermoid of cornea, 180550 (3).
BioGrid reports that CG3629 interacts with CG3884 CG7417 CG4216 CG5674 CG7285 CG8266 CG10159 CG32443 CG3905 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 44 of 4 3.20Up
Head90 64 of 4 3.30Up
Eye65 24 of 4 2.44Up
Thoracicoabdominal ganglion75 54 of 4 2.80Up
Salivary gland22 30 of 4 0.83None
Crop11 20 of 4 0.40Down
Midgut3 10 of 4 0.10Down
Tubule4 00 of 4 0.20Down
Hindgut5 00 of 4 0.20Down
Heart2 00 of 4 0.09Down
Fat body17 30 of 4 0.66None
Ovary2 10 of 4 0.10Down
Testis10 13 of 4 0.40Down
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca8 20 of 4 0.30Down
Mated spermatheca15 51 of 4 0.55None
Adult carcass68 64 of 4 2.50Up
Larval CNS48 74 of 4 1.80Up
Larval Salivary gland8 30 of 4 0.33Down
Larval midgut6 30 of 4 0.22Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut8 10 of 4 0.31Down
Larval fat body6 10 of 4 0.20Down
Larval trachea16 70 of 4 0.61None
Larval carcass32 31 of 4 1.20None
S2 cells (growing)0 00 of 4 0.03Down
Whole fly27 33 of 4



chr2R:20702352-20722686 (+) // 100.0 // (Distal-less):

Annotation Number : CG3629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636088_at
Accessions : protein= , nucleotide= NP_001137759; /// NP_523857; /// NP_726486;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG3629 is a close match (7e-11) to human gene IDG2;IGDS2;PITX2;RGS;RIEG1 (NP_700476), a gene associated with Iridogoniodysgenesis syndrome-2, 137600 (3);Rieger syndrome, 180500 (3);Ring dermoid of cornea, 180550 (3).
BioGrid reports that CG3629 interacts with CG3884 CG7417 CG4216 CG5674 CG7285 CG8266 CG10159 CG32443 CG3905 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 24 of 4 3.40Up
Head48 34 of 4 4.20Up
Eye23 24 of 4 2.06Up
Thoracicoabdominal ganglion22 24 of 4 1.90Up
Salivary gland13 32 of 4 1.16None
Crop6 11 of 4 0.60None
Midgut2 10 of 4 0.20Down
Tubule4 00 of 4 0.40Down
Hindgut3 11 of 4 0.30Down
Heart4 03 of 4 0.38Down
Fat body10 14 of 4 0.88None
Ovary1 00 of 4 0.10Down
Testis3 11 of 4 0.30Down
Male accessory glands4 20 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.12Down
Mated spermatheca3 10 of 4 0.31Down
Adult carcass28 14 of 4 2.50Up
Larval CNS53 44 of 4 4.65Up
Larval Salivary gland2 00 of 4 0.22Down
Larval midgut2 00 of 4 0.20Down
Larval tubule3 00 of 4 0.30Down
Larval hindgut1 00 of 4 0.14Down
Larval fat body0 00 of 4 0.10Down
Larval trachea6 32 of 4 0.53None
Larval carcass23 54 of 4 2.01None
S2 cells (growing)2 00 of 4 0.20Down
Whole fly11 14 of 4



chr2R:20702352-20722125 (+) // 100.0 // (Distal-less):

Annotation Number : CG3629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625771_at
Accessions : protein= , nucleotide= NP_001137759; /// NP_523857; /// NP_726486;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
Homophila reports that CG3629 is a close match (7e-11) to human gene IDG2;IGDS2;PITX2;RGS;RIEG1 (NP_700476), a gene associated with Iridogoniodysgenesis syndrome-2, 137600 (3);Rieger syndrome, 180500 (3);Ring dermoid of cornea, 180550 (3).
BioGrid reports that CG3629 interacts with CG3884 CG7417 CG4216 CG5674 CG7285 CG8266 CG10159 CG32443 CG3905 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 12 of 4 1.50None
Head11 11 of 4 1.30None
Eye13 13 of 4 1.55Up
Thoracicoabdominal ganglion11 00 of 4 1.30Up
Salivary gland32 41 of 4 3.65Up
Crop12 10 of 4 1.30None
Midgut25 14 of 4 2.80Up
Tubule15 21 of 4 1.80Up
Hindgut14 30 of 4 1.70None
Heart2 10 of 4 0.32Down
Fat body13 40 of 4 1.50None
Ovary5 11 of 4 0.60Down
Testis5 00 of 4 0.60Down
Male accessory glands8 10 of 4 1.00None
Virgin spermatheca23 22 of 4 2.61Up
Mated spermatheca19 11 of 4 2.21Up
Adult carcass21 31 of 4 2.40Up
Larval CNS13 53 of 4 1.56None
Larval Salivary gland7 10 of 4 0.88None
Larval midgut21 22 of 4 2.35Up
Larval tubule4 20 of 4 0.50None
Larval hindgut25 23 of 4 2.86Up
Larval fat body13 12 of 4 1.60None
Larval trachea11 30 of 4 1.24None
Larval carcass25 13 of 4 2.81Up
S2 cells (growing)10 20 of 4 1.15None
Whole fly8 01 of 4

Looking for FBgn0000157. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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